LOCUS RID72726.1 889 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4932
PROTEIN_ID RID72726.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04605"
/db_xref="Phytozome:Brara.C04605"
intron_pos 364:0 (1/15)
intron_pos 402:0 (2/15)
intron_pos 434:2 (3/15)
intron_pos 462:0 (4/15)
intron_pos 515:0 (5/15)
intron_pos 607:0 (6/15)
intron_pos 621:0 (7/15)
intron_pos 656:2 (8/15)
intron_pos 678:0 (9/15)
intron_pos 707:2 (10/15)
intron_pos 755:0 (11/15)
intron_pos 776:1 (12/15)
intron_pos 799:0 (13/15)
intron_pos 840:0 (14/15)
intron_pos 862:0 (15/15)
BEGIN
1 MEEVVEGKEF SFPREEEKVL SFWTQIDAFK TQLRRTEHLP EYIFYDGPPF ATGLPHYGHI
61 LAGTIKDIVT RYQTMTGHHV TRRFGWDCHG LPIENLIDKK FGIKLKSQVL EMGIDKYNEE
121 CRSVVDLYVE EWEKVITRSG RWIDFKKDYK TMDLSFMESV WWVFAQLFDK NLIYKGFKVM
181 PYSTGLKTPL SSSEAKGTYK KVSDPEAMVT FPVIGDQDNA AFVAWTTTPW TLPCNLALCV
241 NPEFVYLKVR NKHNGRVYVV AEPRLSALPS FANAAADTKK ANKGGDSAAA DSYEILEKFD
301 GASLVGKKYE PLFDYFSDFS SEAFRVVADD YVTDGSGTGI VHCAPAFGED DYRVCLENNI
361 VEKGEGLVVA VDEDGLFTER ITHFFGRYVK DADKDIIEAV KAKGRLVKTG SFTHEYPFCP
421 RSDTPLLNRA LPSWFMRVDE QLKEQLLENT KETHWVPSHV KDKRFHNWLE NARDWCISRS
481 RFWGTPLPIW ISDDGEEVVV MDSVDKLEKL SGVKVFDLHR HHIDQITIPS SRGPEFGVLR
541 RVEDVFDCWF ESGSMPYAYI HYPFENKELF EKNFPGDFVA EGLDQTRGWY VKLASLNYPQ
601 LLYLNKESIH YCSFPEADGT RVERRIEQSV TRMMTVIDLA RNIRERHKLP LKTPLKEITV
661 VHPDADFLDD ITGKLREYVL EELNVRSLVT CNDTLKYASL KAEPDFSVLG KRLGKSMRLV
721 AKEVKEMSQQ DILRFEEAGK VTIAGHTLEL TDIKIVRVFK RPDGLKDTEI DANGDGDVLV
781 LLDLRPDDSL YEAGVAREIV NRVQKLRKKS GLEPTDVVEV YIESLDKDES VLQQVLSSQE
841 QYIKDTIGSS FLPPTSMPSH AVILSDESFQ NVSKLSFKIS LARPALKFN
//