LOCUS RID72708.1 1343 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4914
PROTEIN_ID RID72708.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04587"
/db_xref="Phytozome:Brara.C04587"
intron_pos 221:2 (1/3)
intron_pos 584:0 (2/3)
intron_pos 698:0 (3/3)
BEGIN
1 MDLSIFLNIV AAAIGFFFIL RKLRSHQENK EFDLSSLTIL SVNPRSFYSS SLSPSSPPSS
61 LSISPVPRSS SSQVWIHDVF LSFRGEDVRN NFLSHIQKEF KRKGITYFND NGIKRGESIA
121 PELIRGIRGS KIVIVLLSRN YGSSKWCLEE LVEIMKCREE LKQTVMAIFC KVDPSDVKKL
181 TGDFGKVFRK TCEGQTKEDI WRWKQALEKV ATIAGYHSSN WDDEASMVEE IATDVSNDLI
241 DFVISSDFEG FAGMEAHMKK MEPFLLLGSN EVRIIGIWGP SGIGKSTIAR VLFSQHSHEF
301 QLSVFMENIK RRCPRPCSDE YSAKLKLQEE FLSKIINQED VKIHHLGVAP DRLKDKRVLV
361 VLDDVDHLMQ LDAMAKDHSW FGPGSRIIVT TQDKKILTAH GINHIYKVEY PGFSEAFEIF
421 CMYAFGQKSP YDGFEKLAWE VKEFAGDLPL GLKVMGSYFK GMLKHEWEEE LPRLSARLDG
481 EIESSLKLRY DALSVDTQDL FLHLACFFNN ERIEKVEEYL ARNIVGVKGQ LRVLAEKSFI
541 SVVGGCIKIH DLLARLGREI VRKQCIHEPG QRQFLVDVGD ICQGSRSVIG IDLKLLELET
601 ELKISDRAFE RMSNVQFLRL LHSDSDSDSG SGSDSGRPKQ TCHHIIDLMT CLPPNLKLLH
661 WDFFPMTCLP SNFISEFLVE IALRKSNYLE KLWEGNKTIR NLKWMYLSDS KNLKELPNLS
721 TATSLQELNL HGCSNLAELP FSIGNVISLR RLNLSHCSSL VGFPSSIWNL VDLGKLDFSH
781 CSSLVRLPSS SGNAIIKLKV LDLSGCTSLM ELPSSMENAT DLEELNLTGC LHLAKLPSSI
841 GNLKKLYLKD CSSLVELPSS VRNSINLKDF TFNGCSNLVE LPFYLGNATD LKKIDLSGCS
901 SLRELPSSIG NMTNLMHLYL DECSSLLELP SSIGSMTSLL YLYLNECSSL VELPSSIGNI
961 NNLMKLHLNG CSSLVELPSS IGNMNNLGNL DLNGCASLVE LPSSIGNINH LRKLSLNGCS
1021 SLVEVPSSIG HMKHLRKLYL ERCSKLTALP ININMKSLGK LILTDSSSLK CVPEISTNIS
1081 VLKLTGTSIE ELPRSIMSWP RLRELHLSDT RIQEIAPWVK ERSSLRELVI KGCTKLVSLP
1141 QLPDSLKFLV ADNCGSLERL DCSFYKTKFH GLSFVNCFGL NQEAREIIIN TWTRDFAIFP
1201 GETMPTYFIY RATRSSLSMT WNGLDTQYFP TSLRFKACLL LVYKGDVDAG DWCWPDISYC
1261 IKDKLNSVKS GYAAYADLWH RSSPTSKEHL LVFKIEEKVG SPELAFEFRS HDKNWEIEEC
1321 GLRPLESWKQ LLWNPWLPHV HGS
//