LOCUS RID72691.1 1191 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4897
PROTEIN_ID RID72691.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04571"
/db_xref="Phytozome:Brara.C04571"
intron_pos 85:0 (1/24)
intron_pos 159:0 (2/24)
intron_pos 256:0 (3/24)
intron_pos 322:0 (4/24)
intron_pos 345:2 (5/24)
intron_pos 374:2 (6/24)
intron_pos 415:0 (7/24)
intron_pos 430:0 (8/24)
intron_pos 476:0 (9/24)
intron_pos 500:1 (10/24)
intron_pos 526:0 (11/24)
intron_pos 562:0 (12/24)
intron_pos 601:0 (13/24)
intron_pos 653:0 (14/24)
intron_pos 688:0 (15/24)
intron_pos 730:0 (16/24)
intron_pos 756:0 (17/24)
intron_pos 788:0 (18/24)
intron_pos 826:2 (19/24)
intron_pos 850:0 (20/24)
intron_pos 868:0 (21/24)
intron_pos 916:0 (22/24)
intron_pos 1016:0 (23/24)
intron_pos 1157:0 (24/24)
BEGIN
1 MEFNNEYEQE PTYIEDDDDE EITQEDAWAV ISAYFEEKGL VRQQLDSFDE FIQNTMQEIV
61 DESADIEIRP ESQHNPGQQS DFAETIYKIS FGQIYLSKPM MTESDGETAT LFPKAARLRN
121 LTYSAPLYVD VSKRVIKKGH DGEEVTETQD FTKVFIGKVP IMLRSSYCTL FQNSEKDLTE
181 LGECPYDQGG YFIINGSEKV LIAQEKMSTN HVYVFKKRQP NKYAYVAEVR SMAENQNRPP
241 STMFVRMLAR ASAKGGSSGQ YIRCTLPYIK AEIPIIIVFR ALGFVADKDI LEHICYDFAD
301 NQMMELLRPS LEEAFVIQNQ LVALDYIGKR GQPMGVGVSK EKRIKYARDI LQKEMLPHVG
361 VGEFCETKKA YYFGYIIHRL LLCALGRRPE DDRDHYGNKR LDLAGPLLGG LFRMLFRKLT
421 RDVRSYVQKC VDNGKEVNLQ FAIKAKTITS GLKYSLATGN WGQANAAGTR AGVSQVLNRL
481 TYASTLSHLR RLNSPIGREG KLAKPRQLHN SQWGMMCPAE TPEGQACGLV KNLALMVYIT
541 VGSAAYPILE FLEEWGTENF EEISPSVIPQ ATKIFVNGMW VGVHRDPDML VKTLRRLRRR
601 VDVNTEVGVV RDIRLKELRI YTDYGRCSRP LFIVDNQRLL IKKKDIYALQ QRESAEEDGW
661 HHLVAKGFIE YIDTEEEETT MISMTINDLV QARLRPDEAY SETYTHCEIH PSLILGVCAS
721 IIPFPDHNQS PRNTYQSAMG KQAMGIYVTN YQFRMDTLAY VLYYPQKPLV TTRAMEHLHF
781 RQLPAGINAI VAISCYSGYN QEDSVIMNQS SIDRGFFRSL FFRSYRDEEK KMGTLVKEDF
841 GRPDRASTMG MRHGSYEKLD DDGLAPPGTR VSGEDVIIGK TTPISQDEAQ GQSSRYTRRD
901 HSISLRHSET GMVDQVLLTT NADGLRFVKV RVRSVRIPQI GDKFSSRHGQ KGTVGMTYTQ
961 EDMPWTIEGV TPDIIVNPHA IPSRMTIGQL IECIMGKVAA HMGKEGDATP FTDVTVDNIS
1021 KALHKCGYQM RGFERMYNGH TGRPLTAMIF LGPTYYQRLK HMVDDKIHSR GRGPVQILTR
1081 QPAEGRSRDG GLRFGEMERD CMIAHGAANF LKERLFDQSD AYRVHVCETC GLIAIANLKK
1141 NSFECRGCKN KTDIVQVHIP YACKLLFQEL MSMAIAPRML TKGLKSAKGR K
//