LOCUS RID72688.1 948 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4894
PROTEIN_ID RID72688.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04568"
/db_xref="Phytozome:Brara.C04568"
intron_pos 101:0 (1/15)
intron_pos 260:0 (2/15)
intron_pos 330:1 (3/15)
intron_pos 383:0 (4/15)
intron_pos 405:2 (5/15)
intron_pos 441:0 (6/15)
intron_pos 469:0 (7/15)
intron_pos 684:1 (8/15)
intron_pos 728:0 (9/15)
intron_pos 746:0 (10/15)
intron_pos 778:1 (11/15)
intron_pos 851:0 (12/15)
intron_pos 880:0 (13/15)
intron_pos 902:0 (14/15)
intron_pos 924:2 (15/15)
BEGIN
1 MYRVQVYHED GRFGEMEIHP PPREPDDDVL RKKKQREVME QVKIGIRVTR FSHPSERCPP
61 LAVLTTVSSC GLCFKLEAPA SSTAQEPLTL LHSSCLTDNK TAVMSLGEEE LHLVAMYSEN
121 INNDRPCFWA FTVASGIYDS CLVMLNLRCL GIVFDLDETL VVANTTRTFD DKIEALQRRI
181 SNEMDPQRIA VMVAEMKRYQ DDKVLLKQYV ESDQVVENGE VIKVQSEIVP ALSDNHQPLV
241 RPLIRLPEKN IILTRINPMV RDTSVLVRMR PSWEELRSYL TAKGRKRFEV YVCTMAERDY
301 ALEMWRLLDP EGNLINANDL LSRIVCVKAG FKKSLFNVFL DATCHPKMAL VIDDRLKVWD
361 EKDQPRVYVV PAFAPYYSPQ AEAAATPVLC VTRNVACGVR GGFFRDFDDS LLQRIAQISY
421 ENDVEDIPSP PDVSHYLVSE DDSSGLNGNK DPLAFDGMAD AEVERRMKEA VSGSSVVLPA
481 ANIDPRIAAP VQYPMASALS VPAPVPVPVV QQPSAIAFPS TQFQQPTSIA KHLVPSEPSL
541 QSSPAREEGE VPESELDPDT RRRLLILQHG QDTRDAAPSE PPFPQRPAVQ APPPPHVQPR
601 NGWFPVEEEI DPAPLRRTVS KEYPLDSESL NRPRHQSFFP KIENSTTQSD RMPHENRRLP
661 KEPLRRDEQL RSNNNQPGSH PFYGEESSWN QSSSRNSDLD FIPGRSVSAT ENPAEVLHQI
721 AIKCGSKVDY KPGLVASTDL RFSVKAWLSG EKIGEGIGKS RREALRKASE VSIQNLADIY
781 LSRANGDPGS SHRDVSPFAN GNIIMGNANA LDKQPFARDE TAMPVPSRPT DPRLEGSMRH
841 TGSITALREL CASEGWEMSF QSQRPLHSDM VHRDELHAQV EIDGRVLGEG VGSTWDEARM
901 QAAERALYSM RSMPPLHRRQ GSPRSFGGMS NKRLKPNFQR MPSSGRYS
//