LOCUS RID72599.1 820 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4805
PROTEIN_ID RID72599.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04486"
/db_xref="Phytozome:Brara.C04486"
intron_pos 73:0 (1/15)
intron_pos 138:0 (2/15)
intron_pos 163:0 (3/15)
intron_pos 219:0 (4/15)
intron_pos 273:2 (5/15)
intron_pos 346:2 (6/15)
intron_pos 389:0 (7/15)
intron_pos 452:0 (8/15)
intron_pos 481:0 (9/15)
intron_pos 533:2 (10/15)
intron_pos 573:2 (11/15)
intron_pos 649:0 (12/15)
intron_pos 669:0 (13/15)
intron_pos 727:0 (14/15)
intron_pos 763:2 (15/15)
BEGIN
1 MELRSDSRSS SFSSLLLVAF LAVLSGLVSR TESAQQPFRR EPGHAHWHHS AFLDVRESVR
61 SDVRRMLHSR AEVPFQVPLE VNVVLVGMNG DGGYRYDVDP HKLEEFLKVS FSTHRPSCQE
121 TGEPLDIEHR LVYNVFPVGQ PELIALEKTV KEAMMPAGTA LEVDFGRLLP AYDVEATKVE
181 SAFNRLYSYI FDMDVGAGSA GTADKPIPSA IFVVNFDKVR MDPRNTEIDL DSLMFAKLPE
241 LSDADKEKQE ADYIYRYRYN GGGASQVWLG SGRYVVIDLS AGPCTYGKIE TEEGSVSPRT
301 LPRIRNIVLP GNVSPVGHQS THDIFSGQLA SLVATTIEHV IAPDVRFETV DLATRVLVPI
361 IVLQNHNRYN IMERGQNYSI NIEEIESEVK KMIHEGQEVV IVGGAHPLHR HEKLAIAVSK
421 AMRGHSLQET KKDGRFHVHT KTYLDGAILK EEMERSTDVL AAGLLDVSDP GLSNKYFLRQ
481 SWEDESEGSS DSIIKHKPLW SSYSSKLQKG KKKKAVKKKG DLYRTYGTRV IPVFILSLAD
541 VDPKLMMEDE SLVWASSDVV IVLQHLNEKI PLSYVSETER QHAVPSQVQR HILAGIASAL
601 GGVSAPYEKT SHAHERPVTN WLWAAGCHPF GPFSNISQMS QMLQDVALRN TIYARVDSAL
661 HKIRETSEAV QNFASEYLKT PLGEPVKDKK NKTRTELWVE KFYKKTTTLP EPFPHELVER
721 LEKYLDTVEE QLVDLSSLLY DHKLYDAHLN SSEILQTTMF TQQYVEHVLE TERENMRCCK
781 IEYKYTVGVK SYQTLVYGGI LIAGFLVYFI VIFFSSPPSR
//