LOCUS RID72578.1 1327 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4784
PROTEIN_ID RID72578.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04466"
/db_xref="Phytozome:Brara.C04466"
intron_pos 493:0 (1/9)
intron_pos 672:1 (2/9)
intron_pos 734:0 (3/9)
intron_pos 898:0 (4/9)
intron_pos 928:2 (5/9)
intron_pos 958:0 (6/9)
intron_pos 996:1 (7/9)
intron_pos 1040:2 (8/9)
intron_pos 1099:0 (9/9)
BEGIN
1 MDEELLLARI IAGIEGGGGG DDESHYHELV ADLKSLLETD DDEILDRFYV SLSSTASSFL
61 RCFSAAMDSP VESGRLAISA SEAYLSLLLS TNCPVFTFFS PVAFLSLLGS IRRYLKPRRR
121 EDSGAASQGN KKKRGRGGGS RKNARNLGRE DGDETEEGGF DAKLVFRVLE RLGSVLGFVH
181 LDRFPDSLKS LVQTVSEIPL LALEHSGVLS YDKLMETCGR ILGGVLSSDH GDVPLTAAEI
241 SKSLTPLLLM GKHQARSFAL GFVSRKIMGL AKDNSELKKV VCNLPKFLVH KAPEKAEPRG
301 FAVEAILEIV KAMEVEDQSE FVEFVMKMGQ GKSNLRILAV DLIPLLMSSL GNPFGSISSE
361 DGVEDSWGLG CLNALVQRCS DSSALIRARA LSNLAQVVGF LSGDERSRSI LKQALGFTGG
421 ETSEGKGRIT DLLKKRCVDE KAATRRAALL LVTKLTSLLG GCFDVSILKT MGTSCSDPLI
481 SIRKAAISAL SEAFRICTDE VVTTEWLHSV PRMVMDNETS IQEECENVFH ELVLERISRA
541 GNSLSQGSAS LPDNWSSSSK DLDRDIEALF PEGVLVLLRE LCNSEVSPWV KKICVSLGKK
601 KQLKPRVALA LQSIIKESES LWLNRSMPIN KWTAPAGAWF LLSEVSVFLP KSVEWEFLHH
661 HWQLLDKNDL QEGTDGQGDE EGVECNSSTW AGDRVFLLQT ISNVSLQLPP EPAADLADNL
721 LKKIEKFNLH SAEVDAHVKA LKTLCVKKAR IPEESDMLVK KWVEQVLSKA SKVTEKYIEG
781 ISSNNLSFAT PAMLGSRRSK KLDSVSKKLS KAITAVYTIG SCIIIYPSAE TTKIVPLLHT
841 VITSGSSDSK LKNKLPQANA CLKQKAPPLY SQSWLTMAKI CLADGKLAKR YIPLFAQELE
901 KSDCAALRNN LVVAMTDFCV HYTAMIECYI PKITKRLRDP CEVVRRQTFI LLSRLLQRDY
961 VKWRGVLFLR FLLSLVDESE KIRRLADFLF GNILKVKAPL LAYNSFVEAI YVLNDCHAHN
1021 GHNNSDAKQS RTKDQAFSIR GNDERARSKR MQIYVTLLKQ MAPEHLLATF AKLCAEVLAA
1081 ASDGMLNIED VTGQSVLQDA FQILACKEIR LSVSRGSSSE TVEMEEEGGD SNGAAAKGRA
1141 ITQAVRKGLI QNTIPIFIEL KRLLESKNSP LTGSLMDCLR VLLKDYKNEI EEMLVADKQL
1201 QKELVYDMQK HEAAKARSMA NQGAGCGTSH RSREPEQPAT AAEREENVRD SGLESRVVSA
1261 AADAMAAKAA RSVLREVNGG AATPPLSAMS VPKLRSSLGG GKQSGRPSAD VLESLRRRPT
1321 FMSDDDN
//