LOCUS RID72570.1 833 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4776
PROTEIN_ID RID72570.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04459"
/db_xref="Phytozome:Brara.C04459"
intron_pos 102:2 (1/11)
intron_pos 164:0 (2/11)
intron_pos 187:0 (3/11)
intron_pos 220:0 (4/11)
intron_pos 246:2 (5/11)
intron_pos 484:0 (6/11)
intron_pos 697:2 (7/11)
intron_pos 726:0 (8/11)
intron_pos 743:1 (9/11)
intron_pos 760:0 (10/11)
intron_pos 776:0 (11/11)
BEGIN
1 MDQEYRSPRS SVPHHHHQHQ HQMRTTVPPP PSPHPSPPVP SHAESDQSTS ELRALDCNLA
61 SLCDHIQSEG FGSGSFSDVV VKAMGSTYHL HRLILSRSSY FRTMLQGPWK EASSPVVNLL
121 VDDKNVNGDA ISVALAYLYG HHPKLDDDNA FRVLAAASFL DLQDLCAICT DFIISELRTS
181 NFLAYQVFAE SQDYGVHGER VKNACWGYLC QSGAMELREM LPKLSAQTLC ALLTSDELWV
241 PSEEKRFELA LYAFIANGAP SNSEHSSQHS CFERGASFPV DSVVSKGKNV VDEFSFRSLD
301 RKLGRLDLED DLRDASDDVS VPLAEGATDF QRGVFGSNLV FQQSANPQTS FGRACTSVVE
361 KTEGSGVAIK GPSEEAYHLS NDSWLSGADS RNSPVSAVAN DWRNGGVSAL TWGGRVVGTK
421 QVTGCIKGKW GLTEEEYNAF VNTFEGGSLL YCHMSFEVLL NARKQLEELG FPCKAVNDGL
481 WLQMLLSQRV QEVAANTCKK CCLISIACAC KQGFGLSHGA PFNNYYCQDN VQNNNMMGGI
541 ETMYVTESSQ AEENGIFKPV RISVRGQHID GLAGIGCEAT FVPPPAWPPT PFVYSRVPIN
601 RNGQPPLASD GSEGRIGQSE ENLKDGLTAL VGLSQGTSGV GNYTRGDLNE GGRSSGSTVG
661 MSEPKEHSVG IDRENASCTI SLDTRTPLCH FPPFRFGVEF EDVHRLANGH VEHSPEFFYA
721 GSLWKISIQA FNDEDPQGRR TIGLFLHRRK AEILDSLRKV HVYIDPRDKV TARYQLVCPS
781 KREVMLFGDF KQRGTLLPKA PKGWGWRTAL PFDELSELLQ NGALRVAAVV QLV
//