LOCUS RID72464.1 1026 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4670
PROTEIN_ID RID72464.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04354"
/db_xref="Phytozome:Brara.C04354"
intron_pos 71:1 (1/12)
intron_pos 101:1 (2/12)
intron_pos 135:0 (3/12)
intron_pos 173:0 (4/12)
intron_pos 200:1 (5/12)
intron_pos 223:0 (6/12)
intron_pos 245:0 (7/12)
intron_pos 286:2 (8/12)
intron_pos 399:0 (9/12)
intron_pos 442:0 (10/12)
intron_pos 810:0 (11/12)
intron_pos 918:2 (12/12)
BEGIN
1 MKMAAGEDQM QGSSGREEKI FVSVRLRPLN VKERVKNEEA DWECINDETV IYRSYLSLSE
61 RSMYPTAYTF DRVFGPECCT KEVYDQGAKE VALSVVSGVH ASVFAYGQTS SGKTYTMSGI
121 TDYALADIYD YIAKHKEREF VLKFSALEIY NESVRDLLST DISPLRLLDD PEKGTVVEKL
181 TEETLRGWNH FKELLSICID QRHIGETALN EVSSRSHQIL RLTIESTARE YLANDKFSTL
241 TATVNFIDLA GSERASQSIS AGTRLKEGGH INRSLLTLGT VIRKLSKGKT GHIPFRDSKL
301 TRILQSSLGG NARTAIICTM SPARIHVEQS RNTLLFASCA KEVTTNAQVN IVMSDKVLVK
361 HLQRELAKLE NELRSPRQAL PVSDTTALLM EKDLQIQKLN KEVFQLAQQL EGAHSRIDDL
421 QQIIGESPIK EILPTNSDHA NLVLGHQYPK LRVRSSWESL YITPESPASA QRSSMISPQS
481 TEHGSDENVF QLTDFRIDSG ATSPGQQCLS FVTPGKFTKV RLNIRGAEST NHKGKSVDQE
541 ERLHEVDEPS EVGSEDTCTE LRCIETESPG IIMSPEPNML QDRSMAMNAL PVYVLDSKNL
601 RPPTEIVEEE ECVKEVSAVF IEPKEKGEPV KTSTHLSVTD RSSNLRRDPG FLDSVTLSPE
661 KPYSLHLEKQ RVGGVRHTRS LSCGTSFVSG SSSPLYEHGR DANTPPTWYQ KESAESNLKP
721 SNIKRPPLPT HSSRMSMPAT WFEKDFNRNQ RTPAALDGVN KRQSSMNSSQ VSSSSAPVFR
781 RQTSSRASIS RQEGEESGPQ RDKRIIHLSM EEIEQKFLAL RSTKSFKDAA VDPIQDYLTT
841 PLNWPLEFKR LEMEIVELWH ACNVSMAHRS YFFLLFRGDE KDCLYMEVEL RRLKYIRETF
901 TNNNKAIENG RTLTSMSSLR ALNRERYKLS QLMQKKLTKE ERENLFLRWG IGLNTKHRRL
961 QLAHRVWSES KDIDHVRESA SVVGKLMGFV DMDLASREMF GLNFSLKPRP KKSSLWKRSV
1021 LSLSIL
//