LOCUS RID72336.1 1110 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4542
PROTEIN_ID RID72336.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04232"
/db_xref="Phytozome:Brara.C04232"
intron_pos 82:1 (1/8)
intron_pos 259:0 (2/8)
intron_pos 650:0 (3/8)
intron_pos 730:0 (4/8)
intron_pos 811:2 (5/8)
intron_pos 859:0 (6/8)
intron_pos 957:0 (7/8)
intron_pos 1046:2 (8/8)
BEGIN
1 MTTAEGEYSK AKTSVWWDIE NCEVPKGWDA HAIAQNVSSA LLKMNYGGPV SISAYGDTNL
61 IPKPVQQALS STGVGLNHVP AGVKDASDKK ILVDMLLWAV DNPAPANFML ISGDRDFSNA
121 LHQLSMRRYT ILLAQPPRAS PPLIAAAKYV WLWTCLASGG PPLTSGESSR LVDSGRSLVS
181 NYEEAKGPVS EQSQSNKPTD STPDARDGND KNPRDNHVPR GGLPQRNMLQ NGRRAAGESV
241 ASGGGFEAHH SDIRHTSQTA FVVSNTAQAN VSAKPILEAS FIASHKAQAN LSAKTIHEAS
301 FMASHKAQAN VSAQPIHEAS FMASHKAQAN VSAQPIHEAA FMASHKAQAN LLAKPIHEPA
361 FVASHKAQAN LSAKPMHEPA FVASHKAQAN VSPKPIYDTA VVASHKAQAN VSPKPIHEAA
421 FVASHKAQAN VSAKPIHEPA FVASHKAQAN VSPKPIHEAA FVAGHKAQTN VSAKPIHEPA
481 FVANHKAQTN VSAKPIHEAA FVASHKAQAN VSVKPIHEAA FVASQKAQAT VSPKPIKEAA
541 LVEPVLCNVC QIRCANKDAY NSHTYGKRHR KNLELQTGKS ENMSRGPVGL PTEVLEKQKN
601 RKKNASEGSR TKPKGHYSCR LCNVVCQSQV VFESHLKGQK HATMMSQSEA FTNSKKLQEK
661 GVWEKVQPKE AVAEPKAKAL NDSKKLQEKG VGEIDQPREA IVEPQLQSQN VQEDSKCFEK
721 HVAMVNQSEA ALVDSRKHEE KVVREKVQPM VTVAEPQSQS QENTKFFEKP NEELREIYGK
781 SKSSVKEKCS STKDWVETVF FGDFGASVKT RECFDGIVKP VNLSGGPTVQ EKEVMVPQGL
841 STVVCDIKSH WTNINHTTPG SVASDDAKSS VSTKHITKET NVWPVFCHVC QISCESKVAY
901 ANHICGKIHQ QKRERMFERD AMLSKENAER LKKVLSKSQT AFASQNHAAM VKEQTEQAHI
961 DSRRTQQELE QALIVDSRKI REEGDQEKET TEEHTLVKTV DHVFQGAQED KEDVKEINHI
1021 SESITNAMLH ALTELNQESS IPKGLRLERV QLPADGNVTK KFEDGSKHKP LPTPSQPVKD
1081 FAGLKEQAAK REEAKVQPDN FWTRLWGKKS
//