LOCUS RID72313.1 1277 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4520
PROTEIN_ID RID72313.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04213"
/db_xref="Phytozome:Brara.C04213"
intron_pos 38:0 (1/25)
intron_pos 87:0 (2/25)
intron_pos 138:0 (3/25)
intron_pos 222:2 (4/25)
intron_pos 281:1 (5/25)
intron_pos 323:0 (6/25)
intron_pos 335:1 (7/25)
intron_pos 366:0 (8/25)
intron_pos 404:0 (9/25)
intron_pos 442:0 (10/25)
intron_pos 470:0 (11/25)
intron_pos 538:1 (12/25)
intron_pos 572:0 (13/25)
intron_pos 605:0 (14/25)
intron_pos 643:0 (15/25)
intron_pos 682:0 (16/25)
intron_pos 709:0 (17/25)
intron_pos 733:0 (18/25)
intron_pos 764:1 (19/25)
intron_pos 775:0 (20/25)
intron_pos 803:2 (21/25)
intron_pos 827:2 (22/25)
intron_pos 904:2 (23/25)
intron_pos 953:0 (24/25)
intron_pos 1173:0 (25/25)
BEGIN
1 MEAAECVKVA VNIRPLITPE LLNGCTDCIT VVPKEPQVHI GSHTFTYDFV FGNAGLPCLE
61 IYDHCCSPLV DALFKGYNAT VLAYGQTGSG KTYTMGTNYS GDGTNCGIIP KVMEDIFKRV
121 GTTKDSTELL IRVSFIEIFK EEVFDLLDSN SPALLKNDGA VQAKHVALSR APIQIRETAG
181 GGITLAGVTE AEVKTKEEMG SFLARGSLAR ATGSTNMNSQ SSRSHAIFTI TLEQKKISSC
241 SSTMTEDAGE DILCAKLHLV DLAGSERAKR TGADGMRLKE GIHINKGLLA LGNVISALGD
301 EKKRKEGGHV PYRDSKLTRL LQDSLGGNSK TVMIACVSPA DTNAEETLNT LKYANRARNI
361 QNKAVINRDP AAAQMQRMRS QIEQLQTELL FYRGDSGGFD ELQILKHKVA LLETSNRELQ
421 NELQERRVAC EHFSKRAYDA QVEKDKLIMK IESVRNGKSL DEIESCQDED VGLINKYVSK
481 IQELEGELLH VRSLKKVSNY KYSESIDSPD DGPRSSNVLF PSSNESSDCE DKVIDVADEV
541 EFQEKELEHC SLQEKLDMEL KELDKRLEEK EAEMKRYSSG GTSVLKQHYE KKVHELEQEK
601 RALQREIEGL RQNLASIPSA PGDGAQKLKE SYLQKLNTLE TQVSELKKKQ DAQAQLLRQK
661 QKSDDAARKL QDEIHRIKSQ KVQLQQKIKQ ESEQFRAWKA SREKEVMQLK KEGRRNEYEM
721 HKLMALNQKQ KLVLQRKTEE ASQATKRLKE LLENRKASSR ETLSGASANG PGTQALMQAI
781 EHEIEVTVRV HEVRSEYERQ MEERARMAKE VARLREETEL LKNAKISSVD DDTMSPGARN
841 SRIFALENML ATSSNTLVSM ASQLSEAEER ERVFGGRGRW NQVRTLGDAK SIMNYLFNLA
901 STARCLARDR EADCREKDVL IRDLKEKIVK FSSFVRYLEI QKADLAHQVK AQASELIKRS
961 AEENLNNEHS LKKQEARNSV IVHEDMDTSD SDDSDHERED PDLDDEWKPE QESERESEQE
1021 SVIKLNRKRN FKVGRRRSSV VPRRSYEENL DSPSDEAVKP TSTSDVCCTC SKSSSCKTMK
1081 CQCRATKGSC GPSCGCSSVK CSNRNADGKQ NNSTSILEHS ESSQEEQQQV LASRGALLLQ
1141 NALADKPVEE TNNDGEGTRT RRKPLSDIGN TTGKTNVPKP MKRRKWRKPL LQLVVDPPPA
1201 TTTPTSSQEP SDSGEANNTK LKLPRSMTSK GSNMLRERNA DQGGGESVGN GGFVQSSSGG
1261 ASGSTTSDEK ENHTRRI
//