LOCUS RID72291.1 4690 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4497
PROTEIN_ID RID72291.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04191"
/db_xref="Phytozome:Brara.C04191"
intron_pos 110:2 (1/12)
intron_pos 353:0 (2/12)
intron_pos 2341:2 (3/12)
intron_pos 2832:1 (4/12)
intron_pos 2920:1 (5/12)
intron_pos 2994:0 (6/12)
intron_pos 3084:2 (7/12)
intron_pos 4049:0 (8/12)
intron_pos 4093:1 (9/12)
intron_pos 4268:0 (10/12)
intron_pos 4567:0 (11/12)
intron_pos 4626:0 (12/12)
BEGIN
1 MDSLLLEDFG QKVDLTRRIR EVLLNYPEGT TVLKELIQNA DDAGATRVRL CLDRRANGTD
61 SLLSDSLAQW QGPSLLAYND AVFTEEDFVS ISRIGGSGKH GQAWKTGRFG VGFNSVYHLT
121 DIPSFVSGKY VVLFDPQGAY LPNISAANPG KRIDFVGSSA LSHYEDQFLP YCAFGCDMKT
181 PFQGTLFRFP LRSPEQAGSS RLSRQAYFEN DVSLMFDQLF EEGVFSLLFL KCVLSIEMYT
241 WDAGDPEPKR LYSVSVSSPK DDTVWHRQAV LRLSKTSISG DREMDAFTLD FVSESEKGSQ
301 SKRRTDKFYI VQTMASASSR IGSFAATASK EYDIHLLPWA SVAACISDDS SENNFLKLGH
361 AFCFLPLPVR TGLTVQVNGY FEVSSNRRGI WYGEDMDRSG KVRSAWNRLL LEDVVAPSFA
421 RLLLCLREVL DPRDSYFSLW PSGSFEAPWN ILVEQIYKNV CNAPVLFSNL DGGKWVSPAD
481 AYLHDEEFSR SKELGDALLQ LEMPIVCLPR PVFDMLLKHP SFFIPKVVTP DRVRSFLKGC
541 KTLSTLKKSL KLVLLEYCLD DLTDDDVCTQ ASNLKLLPLA NGDFGFFSES AEAVAYFICD
601 ELDHMLLQKA YDRVIDRNIP PGLYSRLFAI AESQTANLAI FGIQNLLQLF PRLVPAEWKY
661 RTKISWNPDS NPDHPSSSWF VLFWQYLEKQ CPSLSLFRDW PILPSTSGYL YILSAQSKLI
721 NAEKLPDAVR NVLEKIGSKI LNNNFKVVHS DLSSFVSDAT YTGVLESVFD AASSDMDGVQ
781 NLIYNLNVEE KDELRSFLLD PKWHMGNQIG DLCLRICKIL PIYRVYGETC TQESDYSDLV
841 NPPKYLPPSD VPACLLGCEF ILSSKSSEED VLSRYYGIER MRKSNFYRQH VFNRIEVLQP
901 EIRDQVMLSI LQNLPQLCIE DRFLREELQN LEFVPTVNGP LKRPSLLYDP RNEELYALLE
961 DSDCFPGSGF QKSAILDMLQ GLGLRTTVSP ETILESARLV ERLMNMDLEK AHSRGKVLFS
1021 FLEVNAVKWL PDQSSEDDGV INRIFSRAAT AFRPRNLTCN LVKFWNELKM ICWCPVLVSA
1081 PFQTLPWPVV TSTVAPPKLV RPKTDMWLVS ASMRILDGEC SSTALAYNLG WLSHPGGSAI
1141 AAQLLELGKN NEILIDQVLR QELALAMPKI YSILAGLLGS DEMDIVKAVL EGSRWIWVGD
1201 GFATLSEVVL DGPLHLVPYV RVIPTDLAVF RKLFVELGVR EFLTPSDYAD VLCRIAERKG
1261 DSPLDPQEIR AAVLIAQQLA ESQFLDKVTI YLPDVSGRLF PSSDLVYNDA PWLTASDNHN
1321 SSFSADSTML LNAKRTMQKF VHGNLSNEVA EKLGARSLRR VLLAESADSM NFSLSGAAEA
1381 FGQHEALTTR LKHILEMYAD GPGILFELVQ NAEDAGASEV TFLLDRTHYG TSSLLSPEMA
1441 DWQGPALYCF NNSVFTQQDM YAISRIGQGS KLEKPFAIGR FGLGFNCVYH FTDIPGFVSG
1501 ENIVMFDPHA NHLPGISPTH PGLRIKFAGR NILDQFPDQF APFLHFGCDL EHTFPGTLFR
1561 FPLRNANVAP RSQIKKEIYT PEDVLSLFTS FSGVVSEALI FLRNVKSVSI FVKEGAGQEM
1621 QLLHRVCKDY NVGKDTEPKQ TNQVFSLLDE NLSAGMNKDQ LLKKLSSTVV KELPYKCQKV
1681 VVTEQDSSGC TSHGWITGEC LNAGVSKNHL NLPEMSHKLI PWASVAVLIN SVKTDKAENV
1741 VASNSDIFGP STISVQNRRN FGGRAFCFLP LPITTGLPAH INAYFELSSN RRDLWFGNDM
1801 AGGGKVRSDW NLYLIEEVVV PAYGHLLKKI ASELGPCDLF FSVWPVTLGA EPWASLVRKL
1861 YSFIADNGLR VLYTKARGGQ WISTKQAIYP DFSFPKADEL VDVLADAGLP VINISKLVAE
1921 RFVEACSSLH ILTPQLLRTL LTRRRREFRD RSGLVLALEY CLIDLEVPFT ADLLFGLPLL
1981 PLADGSFTTF SKSGTAERIF FAEENGYELL KDTLPHQLVD REVPEEVYSK LLSVAQSEES
2041 CICLLSCSLL EKLFFKLLPA DWHLAEKILW TPGQHGHPTV EWIRVLWSYL KLSCDDLSVF
2101 SKWPILPVED RCLMQLTVNS NVIQDDGWSE NMSSLLLKCG CRFLNRELPV EHPQLERFVQ
2161 PPTAGGILNA LLGVSGGQEN IKGIFLNVSE GELHELRNFI LQSKWFSAGQ MNEVHFETIK
2221 HLPIFESYRN RKLVSLNCPV KWLKPDGIRE DLLDDDFVRL DSERERAIFK RYLQIEEPSK
2281 IEFYKACVLN RMSEFLSQQE ALLAILHDLN DLVADDVSLQ CALSTTPFVL AANGLWQQPS
2341 RLYDPRVPGL QELLHKEVYF PCEKFLDSKI LDALVGLGLR TTLDCSTYVD AARSVSILHD
2401 SGDQEASRYG RRLFFHVKNL SVKLSSKTGE ANDDESQDLM SKTSEDSPDG ETYPEYEVGS
2461 NLGSLPTEQS EHEFWDQMRS IAWCPICLDP PIEGIPWLES SNLVASPDRV RPKSQMFLVS
2521 ATMHLLDGEC HSPYLLQKLG WMDCLSIDVL CRQLIGISKS YKEQKSRSTV NPDFESMLQS
2581 QIPLLYTRLQ EHARDYDFLA LTSALNGVPW VWLGDDFISA DVLAFDSPVK FTPYLYAVPS
2641 ELSDFKELLL ELGVRLSFDA ADYMSTLQHL QNDLKGSPLT EEQICFVLLV LEAIADCFSE
2701 ASQDCDRNLV LVPDSAGLLV PLDDLVYNDA PWVDSSSLSG KRFVHPSISN DMANKLGIQS
2761 LRCISLVDND ITQDLPCMEF TKLNELLSLY GSKDFLLFDL LELADYCKVK KLHIIFDKRE
2821 HSRKSLLQHN LGEFQGPALL AILEGATLTR EEVCSLQLLS QWRVKGETLN YGLGLLSCFF
2881 MCDLLSIVSG GNFYMFDPQG ATLSASTTQA PAAKMFSLIG TNLVERFSDQ FNPMLIGQDK
2941 AWSLTDSTII RMPLSSEILK DGLEAGLNRV KQISDQFLEN ASRILIFLKS VSQVSYSTWE
3001 QGNVEPHQDY ALHIDSASAI MRNPFSEKKW RKFQLSRLFS SSNSAVKSQI IEVNLHIGEN
3061 KLLDRWLVVL SMGSGQSRNM ALDRRYLAYN LTPVAGVAAH VSRNGRPVDV HPASPIMSPL
3121 PLSGSVNLPV TILGCFLIRN NCGRFLFKNQ KGRDMLDAGD RLIDAWNKEL MSCVRDSYIE
3181 IVVEMERLRR EHSSSSIESS TARQLALSLK AYGHELYSFW PRSNQHDGAL VTEMPKPEWE
3241 CLVEQVIRPF YARVADLPLW QLYSGNLVKA EEGMFLTQPG SEVAVNLLPV TVCSFVKEHH
3301 PVFSVPWELL AEVQAVGIPV REVKPKMVRD LLKKSSASID LRSVDTYIDV LEYCLSDIQF
3361 TEALNPEGAN LDEGNSTSGS MSMPTQAQAG SSDAFEMMTS LGKALFDFGR VVVEDIGRTG
3421 NSNNRYSNLD PRFLSAVNEL KGLPCPTATN QLTRLGTSEL WLGNKEQQAL MLPVSKRFIH
3481 PKVFDRSSLS DIFLKSSVQA FLKLRSWSLP LLASNMKYLF HDDWVNYISE SNTVPWFSWE
3541 STSSSSDDSG PSPEWIRLFW KNFNGSADEL SLFSDWPLIP AFLGRPILCR VRERHLIFFP
3601 PPPSQPISGS ATDMPTTSVS DGSLSELIQH YASGFDLAQR KHPWLILLLN QCNIPVCDTA
3661 YIDCAERCKC LPSPSMSLGQ AIASKLAEGK RAGYITDISS FPTSGRDELF TLLANDFSSS
3721 GSRYQAYELE VLSSLPIFKT VTGSYTHLQR QGLCIIAGNS FLKPHDECCF CYFLDSVECH
3781 FLQALGVAVS HNHQTLVRFG LTGFESRSQS EQEDILIYLY GNWRDLEADS TVIEALREAK
3841 FVRSSDEFSS ELSTPKDLFD PSDTLLVSVF FGERKRFPGE RFSSQGWLRI LRKVGLRTAA
3901 EADVILECAK RVEFLGRERD RPSEEDSFET DLVHSEKDIS VELATLAGSV LEAIFLNFAG
3961 FYSTAFCNTL GQIACVPAES GFPSIGGRKG GKRVLTSYSE AVLLRDWPLA WSSVPILSSQ
4021 RFIPPDFSWT AFRLRSPPIF STVLKHLQVI GRNGGEDTLA HWPNDPDVMT VDVASCEVLK
4081 YLEKVWGSLT SSDILELQKV AFLPAANGTR LVGASSLFVR LPINLSPFAF ELPSLYLPFL
4141 KILKDLGLND VLSVGAAKDI LSKLQKLCGY RRLNPNELRA VMEILHFLCD EINATKAPND
4201 STISSDAIVP DDGGRLVHAR SCVYVDSFGS RYVKYIDTAR LRLVHPLLPE RICLDLGVRK
4261 LSDVVIEELE SSEHIQSLDN IGSISLKAIR RKLQSESFQA ALWTVSRQIT TVHDLSFQDV
4321 QHSLQSAAEK IEFVRNIFTR FLLLPNSVDV TLVSKESMIP EWENESRHRT MYYINLHRTT
4381 ILVAEPPGYI SLLDVMATVV SEVLGFPTSL PIASLFSCPA GSETEISACL RLSSRALTNT
4441 GTAVDSTVGQ EILPQDAVQV QLHPLRPFYK GEIVAWKIQQ GDKLRYGRVP EDVRPSAGQA
4501 LYRFKVEMTP GETGLLLSSQ VFSFRGTSVE NEGPSSLAGV LPAVSDNKSQ GNSESSRTNK
4561 ASSSSQPVNE TQYGRVTAKE LVEAVHEMLS AAGINMELEN QSLLQRTITL QEELKDSQAA
4621 YILEQERAEA SLKEAETAKS QWICKICLIK EVDITIVPCG HVLCRECSAS VARCPFCRLQ
4681 VTRTIRIFRP
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