LOCUS RID72268.1 889 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4474
PROTEIN_ID RID72268.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04169"
/db_xref="Phytozome:Brara.C04169"
intron_pos 60:0 (1/27)
intron_pos 156:0 (2/27)
intron_pos 187:0 (3/27)
intron_pos 213:0 (4/27)
intron_pos 240:0 (5/27)
intron_pos 257:0 (6/27)
intron_pos 285:2 (7/27)
intron_pos 308:0 (8/27)
intron_pos 327:0 (9/27)
intron_pos 337:0 (10/27)
intron_pos 357:0 (11/27)
intron_pos 395:0 (12/27)
intron_pos 433:0 (13/27)
intron_pos 466:0 (14/27)
intron_pos 533:0 (15/27)
intron_pos 557:0 (16/27)
intron_pos 594:0 (17/27)
intron_pos 622:0 (18/27)
intron_pos 658:0 (19/27)
intron_pos 692:0 (20/27)
intron_pos 713:0 (21/27)
intron_pos 738:0 (22/27)
intron_pos 762:0 (23/27)
intron_pos 803:2 (24/27)
intron_pos 821:0 (25/27)
intron_pos 844:0 (26/27)
intron_pos 864:0 (27/27)
BEGIN
1 MAVWQPREDG LSEICALLEQ QISPSSAAVD KSQIWKQLQH FSQIPDFNNY LVFILVQAQG
61 KSVEIRQAAG LLLKNNLKGG YSSMAQENRK YIKSELLPCL GAVDRHIRTT VGTIISEIVN
121 IDGVSGWLEL LPALVTCLDS NDLNHMDGAM DALSKICEDI PHVLDSEVPG LAETTPVNIF
181 LPRLFQFFQS PHASLRKLSL GCVNQYVIIM PAALYNSMDK YLQGLFVLAN DPVAEVRKLV
241 CAAFVQLTEV LPSSIEPHLR NVMEYMLQVN KDPDEEVALE ACEFWSAYCD AQLPPDNLKE
301 LLPRLIPVLL SNMAYADDDE SLLDAEEDES QPDRDQDLKP RFHTSRLHGS EYFDDDDDDS
361 FNVWNLRKCS AAAIDVLSNV FGDEILPALM PLIQAKISTS GDETWKEREA AVLTLGAIAE
421 GCFNGLYPHL SEIVAFLLPL LDDKFPLIRS ISCWTLSRFG KYLIQETGNP KGYEQFEKVL
481 MGLLRRLLDT NKRVQEAACS AFATVEEDAA EELVPHLGVI LQHLMCAFGK YQRRNLRIVY
541 DAIGTLADSV REELNKPAYL EILMPPLVAK WQQLSNSDKD LFPLLECFTS ISQALGVGFA
601 PFAQPVFQRC MDIIQLQQLA KVDPASAGAQ YDREFIVCSL DLLSGLAEGL GSGIESLISQ
661 SNLRDVLLKC CMDETSDVRQ SAFALMGDLA RVFPAYLQPR LLEFLEIASQ QLNANLIREN
721 LSVANNACWA IGELAVKVRQ EVSPIVTNVV SSLGLILQHG EAVNKSLVEN SAITLGRLAW
781 IRPDLVAPHM EHFMKPWCLA LSMVRDDIEK EEAFRGLCAV VKVNPSGGVS SLVFICKAIA
841 SWHEIRNEDV KNEVSQVLNG YKHMLGNSWA ECWSALEPPV KERLSRYQV
//