LOCUS RID72266.1 1073 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4473
PROTEIN_ID RID72266.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04168"
/db_xref="Phytozome:Brara.C04168"
intron_pos 626:0 (1/6)
intron_pos 671:0 (2/6)
intron_pos 815:0 (3/6)
intron_pos 838:1 (4/6)
intron_pos 885:0 (5/6)
intron_pos 989:0 (6/6)
BEGIN
1 MEHEQDDPGV DLPLDDPSRI DKADDSGSNE HPNIYRHDIV RNNKTGSIGV VSEVAGDSDS
61 ESDISDEENY GGDDEDDDND DDGAEEEGKK ANEETVGRGE KNYKCGTLEG DQIRVLWMDD
121 TEPVQDVNNV TVVDRGFLHG DYVASSSDPT GQVGVVVDVD MSVDLLALDG STHKDISTKE
181 LKRVRDFCVG DYVVHGPWLG RIDDVLDNVT VLFDDGSMCR VLRAEPLQLK PVSQSNLEED
241 ANFPYYPGQR VKATSSSVFK SSRWLSGLWK PNRLEGTVTK VTAGSIFVYW IASAGFGPDS
301 AVSPPEEQSP SNLTLLSSFT HANWQVGDWG LLPSVNQSAT IPLHKHVSKL RLYDSQAKRA
361 DREQNKSDLE DELSEEKSEP VGITGEALPK ETTVSSTSKE PAHEPWPLHR KKIRKLVIRK
421 DKRVKKKEES FERALLIVNS RTLVDVAWQD GTVECRREAT TLIPIETPGD QEFVPEQYVV
481 EKASDDDDNT TEPKRVGVVK SVNAKERTAS VRWLKPRLTA EEPREFDKEE IASVYELEVH
541 PDYDYCYGDV VVRLSPVTMA LPASSEATEK DDGHQDAEYH QEAIVHDKEE NEVDTNLSEL
601 SWVGNITGLK DGDIEVTWAD GMVSTVGPQA IYVVGRDDDE SIAAESEASD AASWETVDDD
661 NGDAPETHEE DLGRGSFLEE NSDAGNNGEN DSGRNGALAL PLAAVEFVTR MASGIFSRGQ
721 KTEDSSSSSV TDDNGLTNSS HERGSFLDDH SPTNFSATDN CDSEGTVLEN EAVERSEGEK
781 SEEPIPSESD SCSFKRFDIS QDPLDHHYLG SDEQKTKERR WFKKVDQDWK ILQNNLPDGI
841 FVRVYEDRMD LLRAVIAGAY GTPYQDGLFF FDFHLPSDYP SVPPSAHYHS GGWRLNPNLY
901 EEGKVCLSLL NTWTGRGNEV WDPKSSSILQ VLVSLQGLVL NSKPYFNEAG YDKQIGTAEG
961 EKNSLGYNEN AFLLNCKTMM YLMRRPPKDF EELIKDHFRK RGYYILKACD AYMKGYLIGS
1021 LSKDASVIDE SCSANSNSVG FKLMLAKIAP KLFSALSEVG ADCNEFKHLQ QQQ
//