LOCUS RID72257.1 846 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4463
PROTEIN_ID RID72257.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04158"
/db_xref="Phytozome:Brara.C04158"
intron_pos 73:0 (1/17)
intron_pos 105:0 (2/17)
intron_pos 142:2 (3/17)
intron_pos 165:0 (4/17)
intron_pos 196:0 (5/17)
intron_pos 244:0 (6/17)
intron_pos 275:2 (7/17)
intron_pos 311:0 (8/17)
intron_pos 339:1 (9/17)
intron_pos 379:0 (10/17)
intron_pos 435:0 (11/17)
intron_pos 493:2 (12/17)
intron_pos 529:1 (13/17)
intron_pos 566:0 (14/17)
intron_pos 603:0 (15/17)
intron_pos 638:0 (16/17)
intron_pos 803:0 (17/17)
BEGIN
1 MRIHSSNHPW LLLAILVVLL CFPGALSSKD EEKATSKNTK KEVTYDGTSL IINGKRELLY
61 SGSIHYPRST PDMWPKIIKR AKQGGLNTIQ TYVFWNFHEL EQGKFNFSGR ADLVKFIKLI
121 EKNGMYVTLR LGPFIQAEWT HGGLPYWLRE IPGIFFRTDN KPFKEHTERY VRVILDMMKE
181 EKLFAPQGGP IILGQIENEY SAVQRAYKND GSNYIKWASK LVHSMNLGIP WVMCKQNDAP
241 DPMINACNGR HCGDTFPGPN REHKPSLWTE NWTTQFRVYG DPPVQRSVED IAFSVARFFS
301 KNGSHVNYYM YHGGTNFGRT SAHYVTTRYY DDAPLDEYGL EKEPKYGHLK HLHNALNLCK
361 KALLWGQSRT EKPGKDTEIR YYEQPGTKVC AAFLANNNTE SAEIIKFRGK DYVIPPRSIS
421 ILPDCKTVVY STGEIVSHHT ARNFMKSKKA NKKFDFKVFT ETVPQELKGD SYVPVELYGL
481 AKDESDYGWY TTNFKIDDSD LKKKGGKPTV RVASLGHALH AWLNGEYLGN GHGSHDEKSF
541 VFQKPIALKE GDNHLTMLGV LTGFPDSGSY LEHRFTGPRS VSISGLSSGP MDLTEKSKWG
601 NKVGMEGEKL DIHTEKGLKK VKWEKFSGKA PGLTWYQTYF DAPESLSPAA IRMNGMGKGL
661 IWVNGEGVGR YWMSFLSPLG KSTQIEYHIP RSFLKPKKNL LVIFEEEPNV NPELIDFVIV
721 NRDTVCSYIG EDYTPSVRHW ARKNDNVQAI TDDVQLTANL KCSGTKKISA VEFASFGNPT
781 GSCGNFTRGS CHAPVTKQVV EKYCLGKAEC VIPVNKSTFQ EDKKDSCPKV VKTLAVQVKC
841 GRPKKN
//