LOCUS RID72209.1 922 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4415
PROTEIN_ID RID72209.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04112"
/artificial_location="low-quality sequence region"
/db_xref="Phytozome:Brara.C04112"
intron_pos 24:2 (1/3)
intron_pos 328:2 (2/3)
intron_pos 586:2 (3/3)
BEGIN
1 MIGFWNSISL ILISLSFFFL FQDLHLCHPE QRDAILEIKN EFKIQNPCLD GLPKTVLWVN
61 NSDCCSWEGI RCDANFGDVI MLNLSDSCLH GQLNSKISIS KLQNLRFLTT LDLSNNDFIG
121 KIPSSLGNFY MLTTLDLSRN HFSGEIPSSL GNLSKLATLD LSSNHFSGEI PASLGNLSKL
181 TTLHLSQNNF TGRIPSSLGN LLNLTNLSLC ANNFIGEIPS SFGNFSHLTS LSLCENNFGG
241 EIPTSLGILS HLTVLDLSQN NFVGEIPFSF GSLKRLTSLS VENNKLSGNF PLMLLNLTKL
301 SELSLYGNKY VGKLPLNISL LSNLEFFTGN AFTGTIPSSL FSIPSLTYID LSNNQLNGTL
361 ELGSISLSSK IEDLRLGNNN FMGSIPRSIS KLSNLERLDL SHLNTQGGSV DLSIFSHLKS
421 LKYLYLSHLN TRSTLDLNAN LPFLKSLDTL DLSGNLVSSE NTSLVSDPPL LSELSLSGCG
481 ITEFPEFIRT QRNMKKLDIS NNLIKGQVPG WLWKLPVLQY VNVSSNTLVG FESPTNHGVS
541 LSYLFAANNN LTRKIPCFIC ALRSLAILDL SNNKINGSSS LRRKLQQNCL SGRLPENITE
601 SLRWLDVGHN QLVGKLPRSL IRNSFLEVLN VERNKFNDEF PSWLSSLQEL QVLVLRSNAF
661 HGQIKKTLCP KLRILDISSN HFKGALPSDF FVNWTAMFSL ATEARDRSNE KYMGSGYYVA
721 SMVLMNKGVA MELVRILKIF TAIDFSGNKF EGEIPKSIGL LKELHVLNLS NNYFTGQIPL
781 SMGNLTELES LDVSQNKLSG EIPQELGNLS YLAYMNFSHN QLVGLVPGGT QFRTQPCSSF
841 GENLGLHGPS LDEVCVDIHT TTWKQSETPE LEEEEEEEML SWIAAAIGFI PGVIFGLTMG
901 YILVSYKQEW FIYLFGLNKR KA
//