LOCUS RID72153.1 1089 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4359
PROTEIN_ID RID72153.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04058"
/db_xref="Phytozome:Brara.C04058"
intron_pos 48:0 (1/23)
intron_pos 70:1 (2/23)
intron_pos 135:1 (3/23)
intron_pos 168:0 (4/23)
intron_pos 186:0 (5/23)
intron_pos 225:0 (6/23)
intron_pos 246:1 (7/23)
intron_pos 318:0 (8/23)
intron_pos 347:1 (9/23)
intron_pos 381:0 (10/23)
intron_pos 412:0 (11/23)
intron_pos 435:0 (12/23)
intron_pos 466:0 (13/23)
intron_pos 553:0 (14/23)
intron_pos 580:0 (15/23)
intron_pos 633:0 (16/23)
intron_pos 665:0 (17/23)
intron_pos 699:0 (18/23)
intron_pos 735:0 (19/23)
intron_pos 810:0 (20/23)
intron_pos 899:0 (21/23)
intron_pos 923:0 (22/23)
intron_pos 1033:0 (23/23)
BEGIN
1 MASVYIPVQN SEEEVRVVLD QLPRDASDIL DILKAEQAPL DLWLIIAREY FKQGKIDQFR
61 QILEEGSSSD IDEYYADVKY ERIAILNALG AYYCYLGKTE TKHKEKEDYF ILATQYYNKA
121 SRINMCEPTT WVGKGQLLLA KGEIDNAYQA FTIGLGTSED VPALLGQASV EFHRGRFSES
181 LQLYKRVLQL HPGCPAAVRL GIGLCRYKLG QLDKARQAFD RVLQLDPDNV EALVALGIMD
241 LQANDSLGMR KGMEKMQQAF EIYPYCASAL NYLANHFFFT GQHFLVEQLT ETALAVSTHG
301 PTKSHSFYNL ARSYHSKGDY EKAGMYYMAA IKETNNKPQE FVFPYFGLGQ VQLKLGELKG
361 SVSNFEKVLE VYPDNCETLK ALGHLYTQLG KTDKALEYMR KATKLDPRDA QAFVGLGELL
421 ISSDTGAALD AFKMARTLMK KGGQEVPIEV LNDIGALHFE KEEFESALDN FKEALGDGIW
481 ISFLDEKEKL EETGVSVQGY KDTGIFHRLI ENGHSVDVPW NKVTTLFNMA RLLEQLHKTE
541 TATFLYRLIL FKYPGYIDAY LRLAATAKAQ NNLPLAIELV NEALKVDDKN PNALSLLGEL
601 ELKNDDWVKA KETLRAANDA TDGKDSYAIL SLGNWNYFAA MRNEKRNPKL EATHLEKAKE
661 LYTKVLTQHS SNMYAANGSG IILAEKGQFD IAKDIFTQVQ EAASGSVFLQ MPDVWVNLAH
721 VYFAQGNFAL AVKMYQNCLR KFFYNTDSQI LLYLARTHYE AEHWQECKKT LLRAIHLTPS
781 NYTFRFDLGA VMQKSSSSTL QKKKRTADEV RSTVTEAENA VRVFTQLSAA SDLQVHGFDS
841 KKIQTHVQYC THLLEGAKVH REAAEREELQ NRQRLEVARQ AALAEEARRK AEEHRKYQLE
901 KRKQEDELRR LKQEEEKIQR IKEQWKSNTH GSKRKDRAED DDGEGRPSER KRKKGGKRRK
961 KDKSSRARHY EDDDEEAPTM DDHNEVEDED ANTNYNREEE NQEAEERVDD DDAHDLLAAA
1021 GLEDPDADDD DGVPASVARR RRALSSSDEE GELMESKPNS SPQKENSPGR QEESNAEEEE
1081 EDANLNDEE
//