LOCUS RID72066.1 984 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4271
PROTEIN_ID RID72066.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03971"
/db_xref="Phytozome:Brara.C03971"
intron_pos 607:0 (1/7)
intron_pos 668:0 (2/7)
intron_pos 697:0 (3/7)
intron_pos 748:0 (4/7)
intron_pos 852:0 (5/7)
intron_pos 893:0 (6/7)
intron_pos 922:1 (7/7)
BEGIN
1 MSDTWTRQNV NKNVSLQTGE EFSMEFLKDH TPAHNDDHRF GDLYYQNQPA GFHDLRRIES
61 ECPSDAYDFG RDPRAASTYM PQFNNACYNL GGEKEVITRK AFGEINSNQG CVSVTGKSAP
121 SVILPERVHP NNYTVGGGGE FDRFGKVKFL CSFGGKIMPR SSDEKLKYVG GETHIVSIRK
181 NLSWEELKKK TSAICQQLHS IKYQLPGDEL DSLISVTSDE DLQNMMEEYN GLERPEGSQR
241 PRLFLIPIGQ PEMKITGDTT SYHVNHLDQM LRLDTQLFNG VQYNMSAYPS PPISPSPFMH
301 KDCSQFLGDN SSSESNNSFT LPQPEPSVNF QTYKHEAENS YGIGFSKTHE TPIRFYCEKP
361 CVPEEPKVSF SGSTNSNDSF LGIPHSHSDS TLEVNGGHSS YFSQERQSPS SPLNFTKKQT
421 EEKTVQEHRN IDLSSRRTQS NILDFGGGPG PALHREVSDV GNHYDEIFLN QERNSGKVMG
481 TRVVPSEIEY KNYGNQTTSV VNVVDPWKQI MQDNDLLMAG TSSGNLISLD EGIADDTPNQ
541 ERRLFDHIQE PVNQAARERN MEVSGVLLNK RANSDVDFLF NISSEAAKRE IVHETGLLEL
601 DPTQKNRVQR ESGSGHVRIQ SMDLNQQVPG TANETYNLKI PSVQRQDSLV TTPHTKLDST
661 DPLFLSEEAE ANVDEKVNSF ADTLIVEMEA SVYGLQMIKN ADLEDLTELG SGTYGTVFHG
721 KWRGTDVAIK RIRKSCFGGR SSERERLTKD FWREAQILSN LHHPNVVAFY GIVPDGAGGT
781 LATVTEFMVN GSLRHALVKR DRLLDARKKI IIAMDAAFGM EYLHLKNIVH FDLKCENLLV
841 NLRDPQRPIC KVGDLGLSRI KRNTLVSGGV RGTLPWMAPE LLNGSSTRVS EKVDVFSYGI
901 CLWEILTGEE PYADMHCGAI IGGIVKNTLR PPIPKTCTPE WKKLMEQCWD IDPDARPPFT
961 EITSRLRSMS MELVTKSKKR ENKP
//