LOCUS RID72012.1 724 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4218
PROTEIN_ID RID72012.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03922"
/db_xref="Phytozome:Brara.C03922"
intron_pos 51:0 (1/16)
intron_pos 118:0 (2/16)
intron_pos 156:1 (3/16)
intron_pos 185:2 (4/16)
intron_pos 294:0 (5/16)
intron_pos 344:0 (6/16)
intron_pos 366:2 (7/16)
intron_pos 402:0 (8/16)
intron_pos 455:0 (9/16)
intron_pos 473:0 (10/16)
intron_pos 500:0 (11/16)
intron_pos 546:0 (12/16)
intron_pos 599:1 (13/16)
intron_pos 626:0 (14/16)
intron_pos 675:2 (15/16)
intron_pos 695:0 (16/16)
BEGIN
1 MTSTSLAPSV LVSRFYSSPR EFQDSGNYKC FSRRTRVPSR LRFRVHCEST VQEKELGRCS
61 PFLERLTVPG GDAAAALRYN EWKAVPDIWR SSAEKYGDRV AVVDPYHDPP STFTYRQLEQ
121 EILDFVEGLR AVGVKADEKI ALFADNSCRW LVADQGIMAT GAVNVVRGSR SSVEELLHIY
181 CHSDSVGLVV DNPEFFNRIA DTFSYKASLK FVILLWGDKS SLVTSSRQTP VYSYNEIKNL
241 GQERRAEHAG SSDAGKYEYE FIGPDDTATI MYTSGTTGNP KGVMLTHQNL LHQIRNLSEF
301 VPAKAGERFL SMLPSWHAYE RACEYFIFTC GVEQKYTSIR FLKDDLKRYQ PHYLISVPLV
361 YETLYSGIQK QISTSSPVRK FLALTLIRIS LAYTEMRRVY EGLCLTKNQK PPVHIVALVD
421 WLWARVVAFV LWPLHMLAEK LVHKKIRSSI GITKAGVSGG GSLPMHIDKF FEAIGVNVQN
481 GYGLTETSPV VSARRISCNV LGSVGHPIKD TEFKIVDQET GNVLPPGSKG IVKVRGPPVM
541 RGYYKNPVAT KQVIDDDGWF NTGDMGWIAP HHSTGRSRSC GGVIVLEGRA KDTIVLSTGE
601 NVEPLEIEEA AMRSSLIQQI VVIGQDQRRL GAIVIPNKEA AEGVTKNKIS AVDPEVNELS
661 KETLTSMVYE ELRKWTSECS FQVGPVLIVE EPFTIDNGFM TPTMKIRRDK VVDRYKDEIA
721 RLYK
//