LOCUS RID72008.1 870 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4214
PROTEIN_ID RID72008.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03918"
/db_xref="Phytozome:Brara.C03918"
intron_pos 61:0 (1/21)
intron_pos 169:0 (2/21)
intron_pos 203:0 (3/21)
intron_pos 223:0 (4/21)
intron_pos 299:2 (5/21)
intron_pos 341:0 (6/21)
intron_pos 401:1 (7/21)
intron_pos 411:0 (8/21)
intron_pos 461:2 (9/21)
intron_pos 496:0 (10/21)
intron_pos 528:0 (11/21)
intron_pos 546:2 (12/21)
intron_pos 588:0 (13/21)
intron_pos 609:0 (14/21)
intron_pos 629:0 (15/21)
intron_pos 683:0 (16/21)
intron_pos 707:2 (17/21)
intron_pos 739:0 (18/21)
intron_pos 784:2 (19/21)
intron_pos 811:2 (20/21)
intron_pos 847:0 (21/21)
BEGIN
1 MRVAVIGGGV SGLGSAYVLA RDDAVKELVL FEKEDSLGGH ARTMRFDGVD LDLGFTVFNS
61 VTHPNMMGFL KNLEVDMEDS DMSFSVSLDN GRGYEWGCRH GLSSLFAQKR NILNPYFWQM
121 IRETKKFKED VQKYLEDLER NLDVDRTDTL GEFLKSHGYS DVFQKAYLVP VCGLIWSGSS
181 ESVLNLSAYS VLSFCRNHHL LQLFGRPEGL TVAGRSQTFV AKVRAELEKR GCKIITNCNV
241 QSVATSENGC VIVTTEDGSQ QIFDSCILAV HAPDALKLLG DKVTYEETRV LGAFQYTDSD
301 LYLHRDTDLM PRKTGAWSAW NFLGSSENKA SVTYWLNIIQ KLGEEHDPFF ITVNPEYTPK
361 KTLFKWTTSH PVPSVSTWKA SQELYQIQGK RGIWFCGAYQ GYGFHEEGLK AGMAASQCLL
421 GKDMVTTFTN PKHMVPSVTE KGARFFFTKF LRNFISTGCI TIHEEGGTVF TFEGKDSSCH
481 LKSILEVHSP QFYWKVMTQA DLGLADAYIN GDFSFSDKER GLLDLIMILI ANKELNSKNS
541 KLAKKRGWWT PMFLTASLAS ANNFLKHFSR QNTLTQARRN ISRHYDLSNE LFGLFLDDTM
601 TYSSAVFKSA DEDLRTAQMR KIYLLIDKAR IEKNHEVLEI GCGWGTLAIE VVRRTGCRYT
661 GITLSIEQLK YAEEKVKEAG LEDRITFKLC DYRQLSDAHK YDRIISCEML EAVGHEFMET
721 FFRHCEAALA EDGIFVLQFI SIPEERYDEY RLSSDFIKEY IFPGGCLPSL ARVTSAMASS
781 SRLCIENVEN IGIHYYQTLR LWRTTFLERQ KQINDLGFDD KFIRTWEYYF DYCAAGFKTL
841 TLGNYQVVFS RPGNVAALGD PFRSFPSAQV
//