LOCUS RID71904.1 1050 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4110
PROTEIN_ID RID71904.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03820"
/db_xref="Phytozome:Brara.C03820"
intron_pos 62:0 (1/26)
intron_pos 101:0 (2/26)
intron_pos 115:1 (3/26)
intron_pos 156:0 (4/26)
intron_pos 200:0 (5/26)
intron_pos 230:0 (6/26)
intron_pos 253:1 (7/26)
intron_pos 277:0 (8/26)
intron_pos 331:0 (9/26)
intron_pos 383:0 (10/26)
intron_pos 410:2 (11/26)
intron_pos 440:0 (12/26)
intron_pos 468:0 (13/26)
intron_pos 514:0 (14/26)
intron_pos 536:0 (15/26)
intron_pos 569:0 (16/26)
intron_pos 606:0 (17/26)
intron_pos 682:0 (18/26)
intron_pos 737:0 (19/26)
intron_pos 809:0 (20/26)
intron_pos 855:0 (21/26)
intron_pos 888:2 (22/26)
intron_pos 904:0 (23/26)
intron_pos 950:0 (24/26)
intron_pos 986:0 (25/26)
intron_pos 1016:2 (26/26)
BEGIN
1 MSTTSSNGLL LTSMSGRHDD MEAGSARTDH SDHEELEHDP DDPFDLDNTK NASAASLRRW
61 RQAALVLNAS RRFRYTLDLN KEEHYENRRR MIRAHAQVIR AALLFKLAGE QQIGAFGSSS
121 STTPATSTGN FDIDLEKLVS MTRNQNMSNL QQLGGVKGVA EKLKSNLEQG IEEDEKEVTD
181 RKNAFGSNTY PKKKGKSFYM FLWEAWQDLT LIILIIAAVT SLALGIKTEG LKEGWLDGGS
241 IAFAVLLVIM VTAVSDYRQS LQFQNLNDEK RNIQLEVMRG GRTVKISIYD VVVGDVIPLR
301 IGDQVPADGV LISGHSLAID ESSMTGESKI VNKDQKSPFL MSGCKVADGV GSMLVTGVGI
361 NTEWGLLMAS ISEDTGEETP LQVRLNGLAT FIGIVGLTVA LVVLVALLVR YFTGTSQDSN
421 GATQFIKGTT SISDIVDDCV RRLSACETMG SATTICSDKT GTLTLNQMTV VETYAGGSKM
481 DVADNPSGLH PKLVALISEG VAQNTTGNIF HPKDGGEVEI SGSPTERAIL SWAYKLGMKF
541 DTIRSESAII HAFPFNSEKK RGGVAVLRGD SEVFIHWKGA AEIVLACCTQ FMDSNGTLQP
601 IDDQKEFFRL AIDAMAKNSL RCVAIACRTQ ELNKVPKEQE DLDKWDLPED ELTLLAIVGI
661 KDPCRPGVRE AVRICTSAGV KVRMVTGDNL QTAKAIALEC GILSSDTEAV EPTIIEGKVF
721 RELSEKEREQ VAKRITVMGR SSPNDKLLLV QALRKNGDVV AVTGDGTNDA PALHEADIGL
781 SMGISGTEVA KESSDIIILD DNFASVVKVV RWGRSVYANI QKFIQFQLTV NVAALIINVV
841 AAMSSGDVPL KAVQLLWVNL IMDTLGALAL ATEPPTDHLM HRTPVGRREP LITNIMWRNL
901 LVQSLYQVAV LLVLNFAGLS VLGLKQDSDH AHAVEVKNTM IFNAFVMCQI FNEFNARKPD
961 EMNVFSGVTK NPLFIAIVGV TFVLQILIVT FLGEFAHTVP LSWQLWLASI VIGLVSWPLA
1021 VVGKLIPVPK TPMSIYFKKP FRKYKASRSA
//