LOCUS RID71769.1 937 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3975
PROTEIN_ID RID71769.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03691"
/db_xref="Phytozome:Brara.C03691"
intron_pos 17:1 (1/10)
intron_pos 34:0 (2/10)
intron_pos 45:0 (3/10)
intron_pos 588:0 (4/10)
intron_pos 625:0 (5/10)
intron_pos 655:0 (6/10)
intron_pos 716:0 (7/10)
intron_pos 758:1 (8/10)
intron_pos 823:0 (9/10)
intron_pos 871:0 (10/10)
BEGIN
1 MEGNFEETNK LPELKLDAKQ AQGFLSFFKT LPNDLRAVRF FDRKDYYTAH GENSVFIAQT
61 YYHTTTALRQ IGSGANALSS VSVSKNMFET IVRDLLLERN DHTVELYEGS GSNWRLVKAG
121 SPGNIGSFED VLFANNEMQD TPVVVSLFPS FQESRCVVGM AYVDLTRRVL GLAEFLDDSR
181 FTNLESSLVA IGAKECIFPA ESGKTNECKS LHESLERCGV MTTERSRQEF KGRDLESDLK
241 RLVKGNIEPV RDLISGFELA TPALGALLSF SELLSDEGNY GNFTIRRYDI GGFMRLDSAA
301 MRALNVMESK TDANKNFSLF GLMNRTCTAG MGKRLLHMWL KQPLVDLNEI TMRLDIVQCF
361 VEEAGLRQDL RQHLKRISDV ERLVRSLERR RGGLQHIIKL YQSTIRLPFI KTSLQQYTGE
421 FSSLISKRYI KRLEALSDAD HLGKFIDLVE YSVDLDQLEN GEYMISSSYD TTLSSLKDQK
481 ELLEQQIHEL HKKTAIELDL PVDKALKLDK AAQYGHVFRI TKKEEPKIRK KLTTQFLVLE
541 TRKDGVKFTN TKLKKLGDQY QSVVDDYKSC QKELVDRVVQ TVASFSEVFE ELARTLSEMD
601 VLLSFADLAA SCPTPYCRPE VTSSDVGDIV LEGSRHPCVE AQDWVNFIPN DCRLMRGESW
661 FQIITGPNMG GKSTFIRQVG VTVLMAQVGS FVPCDKASVS IRDCIFARVG AGDCQLRGVS
721 TFMQEMLETA SILKGATDKS LIIIDELGRG TSTYDGFGLA WAICEHLVQV KKAPTLFATH
781 FHELTALAQA NSEVAGNTVG VANFHVSAHI DTESRKLTML YKVEPGACDQ SFGIHVAEFA
841 NFPESVVALA REKAAELEDF SPPSMIINNE ENGKRKSRED DAEEVSRGAA RAHKFLKEFA
901 EMPLDKMELK DSLKRLHELK EELAKDDVGC HWLKQFL
//