LOCUS RID71616.1 842 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3822
PROTEIN_ID RID71616.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03543"
/db_xref="Phytozome:Brara.C03543"
intron_pos 32:1 (1/16)
intron_pos 90:2 (2/16)
intron_pos 114:2 (3/16)
intron_pos 138:2 (4/16)
intron_pos 162:2 (5/16)
intron_pos 186:2 (6/16)
intron_pos 210:2 (7/16)
intron_pos 234:2 (8/16)
intron_pos 256:2 (9/16)
intron_pos 277:2 (10/16)
intron_pos 291:2 (11/16)
intron_pos 454:0 (12/16)
intron_pos 519:1 (13/16)
intron_pos 559:0 (14/16)
intron_pos 689:2 (15/16)
intron_pos 740:0 (16/16)
BEGIN
1 MSLNRLIFPY FILVSLFLSC FASSQTLPKE EVDALRAVAT ALKKSNWNFN VDPCDLTSSD
61 GGWRKPNADK LFEDKVTCSC TSTVCHVTKI LLGTNYLTGD IPSTFSKLTK LTEFRISDNQ
121 FTGTIPDFIQ NWTELTKLTI QASGLVGPIP SGIGTLVKLT DLRISDLNGP SSPFPPLQNM
181 TSMQTLIIRN SNLTGELPDY LVSITTLKLL DLSFNKLSGP IPATYKDLWN VDNVYLTSNM
241 LSGEVPKWMV ENADKIDLTY NNFSRDATTS QCHTREANLF SSTRPLVANN YSNVYCLSPY
301 ICPKSKSLNL YNYINHIAKH LIYFLFMLSA LYGLHINCGG DELTVNGNKY EADRLDSTFY
361 DSRTGWFSSN TGHFLDDERS PKVPTIWTNT SELKIAEPSL YTDARLSAIS LTYYAFCLGD
421 GSYTVNLHFA EIMFSDNETY SSLGRRFFDI YVQGKLEVKN FDIVSEAKGV GRAVVKSFRV
481 MVTNGTLEIR LFWAGKGTQA IPVRGSYGAL ISAVSVDQNF KNLDCKISSF SLKQIKIATD
541 NFNPANKIGE GGFGPVHKQG NREFLNEIGM ISALQHPHLV KLYGCCVEGG QLLLIYEYLV
601 NNSLARALFG PLKTQIRLDW PIRQKICLGI ARGLAFLHEE SRLKIVHRDI KAANVLLDKE
661 LNPKISDFGL AKLDEQENTH MSTRVAGTYG YMAPEYAVKG HLTDKADVYS FGVVALEIVH
721 GRGSTSARSK AQTFYLLDWV HVLREQNRLM EVVDPRLGTD YNREEAMKMI QIGILCTSLD
781 PSDRPSMSTV VSMLEGHSTV DVEELLETSF SRENEKDEGS PVIFFGFFVF LLTKKMISRL
841 FY
//