LOCUS RID71613.1 1020 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3819
PROTEIN_ID RID71613.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03540"
/db_xref="Phytozome:Brara.C03540"
intron_pos 31:1 (1/22)
intron_pos 89:2 (2/22)
intron_pos 113:2 (3/22)
intron_pos 136:2 (4/22)
intron_pos 160:2 (5/22)
intron_pos 184:2 (6/22)
intron_pos 208:2 (7/22)
intron_pos 232:2 (8/22)
intron_pos 256:2 (9/22)
intron_pos 280:2 (10/22)
intron_pos 304:2 (11/22)
intron_pos 328:2 (12/22)
intron_pos 350:2 (13/22)
intron_pos 371:2 (14/22)
intron_pos 385:2 (15/22)
intron_pos 399:1 (16/22)
intron_pos 524:0 (17/22)
intron_pos 589:1 (18/22)
intron_pos 643:1 (19/22)
intron_pos 683:0 (20/22)
intron_pos 832:2 (21/22)
intron_pos 883:0 (22/22)
BEGIN
1 MSFNLLLFPY FILFLILSDF AYSQTLPKQE VGALRAVATA LKKSNWKFNV NPCDLTSSDG
61 GWRNPNAGKG FEDAVTCNCS STVCHVTSIV LKAQDLQGSL PKELAGLPFL QEIDLSRNYL
121 NGSIPPEWGT LPLVNISLLG NRISGPIPKE IGNITTLTSL VLEFNQISGK LPPELGNLQK
181 IERILLSSNY LTGDIPSTFS KLTTLTDFRI SDNQFIGVIP DFIENWTELG KLVIQASGLV
241 GTIPSTIGPL GKLTDLRISD LNGPGSPFPP LQNMTSLKTL ILRNSNLTGE LPAYLGSITT
301 LKLLDLSFNK LSGPIPETYS ALSNVDNIYF TSNMLTGEVP SWMVDKGDKI DLTYNNFSKD
361 PRTAECQKNS VNMFSSTSPL VANNYSNVSC LSNYICPKTF YGLHINCGGN ELTINGTKYD
421 ADTSDRPIFY NSRNGWVSSN TGNFLDDDRS PKEVTLWTNR SELKIAEPRL YTHARLSAIS
481 LTYYALCLGE GNYTVNLHFS EIMFSDNETY GSLGRRFFDI YVQGKLEVKD FDIVNEAKGV
541 GRAVVKSFQV MITNGKLEIR LFWAGKGTQA IPSRGVYGSL ISAVSVDPNF IPPKEAGAGT
601 GVGSSIGIVV GAVVASTVFL VLLIGGILWW RGCLRPKSQM EKDFKNLDFQ ISSFSLKQIK
661 VATDNFDPAN KIGEGGFGPV HKGKLTDGTV IAVKQLSSKS KQGNREFLNE IGMISALQHP
721 HLVKLYGCCV EGGQLLLVYE YLENNSLARA LFGPQETQIR LDWPTRQNIC VGIARGLAYL
781 HEESRLKIVH RDIKATNVLL DKELNPKISD FGLAKLDEDE NTHMSTRVAG TYGYMAPEYA
841 MRGHLTDKAD VYSFGVVALE IVNGRSNTSA QSKAETFYLL DWVHVLREQN KLMEVVDPRL
901 GTDYNREEAK TMIHIGILCT SQVPSDRPSM STVVSMLEGH STVDVEKLLE ASFNRGNEKD
961 EESVRAMKKH YAMIGGEVMT NVTDQTTTTD GPFTSSSTST ANAGDLYPVK LDSAYWNSRV
//