LOCUS RID71590.1 1767 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3796
PROTEIN_ID RID71590.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03517"
/db_xref="Phytozome:Brara.C03517"
intron_pos 204:2 (1/10)
intron_pos 453:2 (2/10)
intron_pos 505:0 (3/10)
intron_pos 620:0 (4/10)
intron_pos 902:0 (5/10)
intron_pos 1012:2 (6/10)
intron_pos 1054:0 (7/10)
intron_pos 1097:0 (8/10)
intron_pos 1571:0 (9/10)
intron_pos 1660:0 (10/10)
BEGIN
1 MDTRDTSNKT LSEIVGLVKS WIPWRSEPAT VSRDFWMPDQ SCRVCYECDC QFTLINRRHH
61 CRLCGRVFCG KCTANSIPLA GSDLRAPREE WERIRVCNYC FRQWEEQGEG GAHVSNIPEL
121 STSPSESSLL SSKTSTTANS SSFALGSMPG LVGPYQRAQR GSDVSLHGVS SMEAGTTRKG
181 KETSRRNSFI ATDVEDPSRF ASNRSDDEYD EYGVYQTDID TSHSPQANQY YGPMEYEETS
241 IGGDGSCKHL SGETSDQKSL SGSPLIHHCL DSLIGEGAEQ FQKKDEHDGR DESEAPSPPD
301 ISDDQVAEPV DFENNGLLWV PPDPENEEDE RESPLYDEED NEGDASGEWG YLRPSASFGS
361 GEYRSEDRTS EEHKKAMKNV VDGHFRALLA QLLQVENIPV SDEEGKESWL EIITSLSWEA
421 ANLLKPDMSK SGGMDPGGYV KVKCLASGFR HDSMVVKGVV CKKNVAHRRM RAKIENARLL
481 ILGGGLEYQR VSNQLSSFDT LLQQEKDHLK MAVAKIHAER PNILLVEKSV SRFAQEYLLA
541 KDISLVLNIK RPLLDRIARC TGAQIIPSVD HLSSQKLGYC ENFRVDRFLE EHGSAGQAGK
601 KVVKTLMYFE GCPRPLGFTI LLRGANEEEL KKVKHVVQYG VFAAYHLALE TSFLADEGAS
661 PELPLNSPIT VALPDKSMSI ERSISTVPGF MVSAYEKSPT MLTGSEPQRA NSVPASELLS
721 TTANLSIQKD INPLIPNGSG WQGREGTPGF TFSRYNVPLN LPDRVIAGRN ADLSERSALA
781 DKSNPTIEAA DILDSSLRSS GQGFVPQSSQ SSTNVVVENQ DNGTEVTAIQ QQNSETPKEP
841 QSQKEEFPPA PSDHQSILVS LSSRSVWKGT VCERSHLFRI KYYGSFDKPL GRFLRDHLFD
901 QGYRCRSCEM PSEAHVHCYT HRQGSLTISV KKLQDYLLPG EKEGKIWMWH RCLRCPRPDG
961 FPPATLRVVM SDAAWGLSFG KFLELSFSNH AAASRVACCG HSLHRDCLRF YGFGNMVACF
1021 RYATIDVNSV YLPPSVLSFN YDNQDWIQRE TDEVVERAEL LFSEVLNAIS QIAAKGFRRR
1081 IGELEELLQR EKAEFEDNIQ KMMLQREVKE GQPQVDILEL YRLRRQLIFQ SYMWDHRLIN
1141 ASSLSKIESS DENEKVPLAK SQTLPEMSAG TNSLLSGSEV DQNPDGGSTD DTKVQKEADT
1201 NLALNPEKEY GGEVSPSKTL PDSSEPLESK LDVRRTQSDG EIVMKNLSAT LDAAWIGERQ
1261 TSGEIPTNTK ILLPPSNSST FPPIDLPEQQ NEFKVAYPVS PALPSKDYES SDDSVSWLGV
1321 PFLNFYRSIN KNFLLSSQKL DTFGEHSPVY ISSFREAELQ GGPRLLLPVG INDIVVPVYD
1381 DEPTSMIAYA LTSPEYQRQI SLEGESLVSY TSELNIPRPV DDTIFDPSRS TSSVDESILS
1441 MSSSRSLDPL SYTKALHARV SYGEDGTLGK VKYTVTCYYA KRFEALRGIC IPSELEYIRS
1501 LSRCKKWGAQ GGKSNVFFAK TLDDRFIIKQ VTKTELESFI KFAPAYFKYL SESISTKSPT
1561 CLAKILGIYQ VATKQLKSGK ETKMDVLIME NLLFGRTVKR LYDLKGSSRA RYNPDASGSN
1621 KVLLDQNLIE AMPTSPIFVG NKAKRLLERA VWNDTAFLAL GDVMDYSLLV GVDEEKNELV
1681 LGIIDFLRQY TWDKHLESWV KFTGILGGPK NEAPTVISPK QYKRRFRKAM TTYFLMVPDQ
1741 WSPPNVIANN SRSDQPEETS QAGTQAE
//