LOCUS RID71579.1 1156 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3785
PROTEIN_ID RID71579.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03509"
/db_xref="Phytozome:Brara.C03509"
intron_pos 21:2 (1/10)
intron_pos 82:2 (2/10)
intron_pos 116:0 (3/10)
intron_pos 126:1 (4/10)
intron_pos 138:2 (5/10)
intron_pos 189:2 (6/10)
intron_pos 545:1 (7/10)
intron_pos 764:0 (8/10)
intron_pos 1118:1 (9/10)
intron_pos 1141:1 (10/10)
BEGIN
1 MRPAAIPLDY AVFQLSPKRS RCELFVSTAG NTEKLASGLV KPFVAHLKVA EEHVAREAQS
61 IKLQVESSDN AGTWFTKGTL ERFVRFVSTP EVLELVSALD EEMSQLEAAR KIYGEGTGDQ
121 RSGAKDGAET TTAADVTKKE LLRAIDLRLA AVRQDLATAC NRASAAGFNP VTVPELSQFA
181 DRFGANRLNE ACAKFIALCQ RRPELMSSWR FNQEEEAIRS SWESDMSIDD PSEDPSRNLA
241 ANRTQQHREH QTRIQGQSAT GSSYSQQEAK VMPQSSHDEK NDEEEKKGQL QNEPLASQTK
301 QLTRRLSVQE RINLFENKQK ESSGGKTAVV KSTELKRLSS DLSSSVRRWS GASDMSIDLG
361 NDRKDGTGDS PLCTPPASSV SKDGSGISSK QSVGYKQTGL SHVESSHRTE DECNSNNLGD
421 KEVNLNMPLS TDSQVGHQGN SQDGLLEKSS KFPYNECKYS ENANRDDDES DNKMGDFELN
481 KQDQIQFRDP RSHSLSTLQQ LGGTESNLSS VRSNGGTAES PRKEPSSRQS PPVEDRQRKT
541 QVYGGSEQMK RPQGRRGEGS ESDTMSQVSP AEQVQRARAS KGSQELNDEL KVKANELEKL
601 FAEHMLRVPG DQSSSVRRGK PQAATSQPRR PVAEDQKTPA TPTLSSNDED KFKTPPTMKM
661 VGNNDYGDNT TRQKLPEISF SDNSRGKSYE KYMQKRDVKL KEDWSLRRSE KEAKLKLMQD
721 ILDRSNSEMK AKFSQSTGRR DSDVRRAEKL VYFNSRLSAK KDQHPISSFL TEEDEDVSRS
781 TQSKKLQQNK TSSLTARTAA TSASRSSAKV STPSAVRRRG QDKVLAQSVP NFAEFKKQEG
841 MMKPASGVGK NGVRSQARSS VRPKAVTEEE KPRRPASIRK GAAEEAAELA DVSQLKSEDD
901 VSVPLNLDKA SEGSEEMEKE ELEEVVDDAE EAFTDAENEK SRRSQEFEEW GGNGESNSQL
961 EPDSNAELPS RNHQTIGSFL DSHATVEDSP VGSPAFWNLS SLNQTENDTT QMRKKWGGAA
1021 AQKRGVGGGN NNPSQSQCQQ DVTKGLKRLL NFGRKNRAAE NLSDWISATT SEGDDDTEDG
1081 RDLANRSSED LRKSRMGFLQ TQASDDSFNE SELFNEQAQN TSAPLSFKLK EDQASGTSVK
1141 APRSFFSLSN FRSKGK
//