LOCUS RID71526.1 1808 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3733
PROTEIN_ID RID71526.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03461"
/db_xref="Phytozome:Brara.C03461"
intron_pos 54:2 (1/34)
intron_pos 89:0 (2/34)
intron_pos 126:2 (3/34)
intron_pos 167:2 (4/34)
intron_pos 201:2 (5/34)
intron_pos 257:0 (6/34)
intron_pos 296:0 (7/34)
intron_pos 318:2 (8/34)
intron_pos 352:2 (9/34)
intron_pos 423:0 (10/34)
intron_pos 501:0 (11/34)
intron_pos 543:2 (12/34)
intron_pos 583:0 (13/34)
intron_pos 656:0 (14/34)
intron_pos 709:0 (15/34)
intron_pos 734:2 (16/34)
intron_pos 804:1 (17/34)
intron_pos 873:2 (18/34)
intron_pos 900:1 (19/34)
intron_pos 939:2 (20/34)
intron_pos 996:2 (21/34)
intron_pos 1053:0 (22/34)
intron_pos 1067:2 (23/34)
intron_pos 1082:0 (24/34)
intron_pos 1130:2 (25/34)
intron_pos 1162:1 (26/34)
intron_pos 1459:0 (27/34)
intron_pos 1553:0 (28/34)
intron_pos 1585:0 (29/34)
intron_pos 1644:2 (30/34)
intron_pos 1672:0 (31/34)
intron_pos 1713:2 (32/34)
intron_pos 1744:2 (33/34)
intron_pos 1796:0 (34/34)
BEGIN
1 MHLFNGWLPP PVAEETKKEK ESFARVVRCV KELHRPDDPE SVYATLKWIS VIELYVRAKS
61 DLAVEDVTEL VEIGLQIFHS SQDKLYAQVR WGNVLVRLMN KYRKKLSLKV EWRPLYDTLI
121 HAHFSRSPGP EGWRLRQRHF EAVTSLTRSC RRFFPQGAAA DIWSEFMSLL ENPWHNSSFE
181 GSGFVRLFLP TNPENQDFFS EKWINNCLEL WDSIPNCQFW NSQWAAVLAR VIKNCSSIDW
241 ESYLPMLFSR FLNMFEVPVA NGSGSYPFSV DVPRNTRFLF PNRTMTPSKS IAQSIVYFLK
301 PGSTAHEQFK KLVNLLEQYY HPSNGGRWTY SLERFLLHLV VAFQKRLQRE QQNPDSLSKV
361 CLGKPERIAF VEVVLKLIDR GQYSKNEHLS ETVAAATSIL SYVEPSLVLP FVASRFHLAL
421 ETTTATHQLK TAMMSVAFAG RSILQSSMST AKQELGGDMD DSVFLDLIGI SLSNALLGMD
481 ANDPPKTLAT MQLIGSIFSN MAVLDDSSDD ISIMTMASFS EWLDEFLCRL IALLQHLEPN
541 SVINEGLSSS ATSGTFLVED GPYYYCMLEI LLGRLSGSLY SQALKKISKF VRTNILPGAI
601 AEVGLLCCAC VHSNPEEAVV QIVEPMILAV ISSLKDTPVT GFGGKGSADT LGSNKKDKQT
661 LSPALEAAID YQLKVLSVTI TYAGSSLLRY KDHFIEAISS AFNSSSWKVN GAGDHLLRSL
721 LGSLILYYPM DQYKCLSRHP AAPALEEWIS TKASSKDEQV AHSRWHVPTK EEIQFANELL
781 DLHLQSALDD LLRICQSNIH SDAGDEKTHL KVTLLRIDST LQGVLSCLPD FRPSPKHDMF
841 EELPFFIAGA SGSSVGSAEI RERTAETIHA ACKYLLEKKS DDSILLVLII RIMDALGNYG
901 SLEYDEWYNH RQAWKLESAA IVEPPANFIT EFHSKGKRRP RWALIDKAYM HNTWRSSQSS
961 YHLFRTDGNF SPPASLTLLV DDLLTLCLHN YETVRVIAGK SLLKLLKRWP PLLSKCVRSL
1021 SENLRNPDAP ENVVLGSCGI LSSQSVLKHL TTDPKSFSSF LLGILSSSHH ESMKSQKAII
1081 ELFVKYNIHF AGLSRNILRS LDSHVEGSTS GDLVSQISSM SFDSSSLHWR YNLMANRVLL
1141 LLAMSCRMDP AFSFKILNET AGHFLKNLKS QLPQTRILAI SALNTLLKES PHKMQGKDQP
1201 PVSSQENANS SLDLALSQIF QEEGFFKETF ESLSHIHITD TDSSSRGNHG SSSFQSMADK
1261 SITRFYFEFS ASWPRTPSWI SLLGSDIFYP SFARIFKRLA QECGVPVLLA LKSPLEEFCN
1321 AKERPKQCVA AETLAGLLHS DVNGLQSEWD SWIMVQLQNV ILGQSVESIP EWATCIRYAV
1381 TGKGKQGTKI PMMRQQILDC IVAPLPPTAT TTVVSKRYAF LSAALIELSP PKMPVSEVKL
1441 HIALLDELIR NMSHSSAQIR EAIGVILSVL CSNIRLRMSY QQKHPSEEGR TDVDSQLKEE
1501 NWFKLISARA SEAVTNIQQA SISDSMDTSA DVDMENAQSN GDSLDDVKWM ETLFHFIISS
1561 FKSGRSSFLG DVIAGFLYPV ISLQETSHKD LSTLAKAAFE LLKWRVFPGS HLQKVIEVIL
1621 SSADDSNWRI RSSTLTYLRT FMYRHTFILA HEEKQKIWKT VEKLLVDSQV EVREHAAAVL
1681 AGLMKGGDED FAADFRDRSY AEANSIQRKR NRRKSSSTQS IAAVHGAVLG LVASVLSVPY
1741 DMPSWLPDHV TLLARFAGEP TPVKSTVTKA VAEFRRTHAD TWNIQKDSFT EEQLEVLADT
1801 SSSSSYFA
//