LOCUS RID71469.1 1014 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3676
PROTEIN_ID RID71469.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03406"
/db_xref="Phytozome:Brara.C03406"
intron_pos 29:0 (1/16)
intron_pos 64:0 (2/16)
intron_pos 112:2 (3/16)
intron_pos 145:0 (4/16)
intron_pos 160:2 (5/16)
intron_pos 225:0 (6/16)
intron_pos 247:1 (7/16)
intron_pos 307:1 (8/16)
intron_pos 662:1 (9/16)
intron_pos 716:2 (10/16)
intron_pos 741:0 (11/16)
intron_pos 800:0 (12/16)
intron_pos 840:0 (13/16)
intron_pos 884:1 (14/16)
intron_pos 922:0 (15/16)
intron_pos 960:2 (16/16)
BEGIN
1 MEEVQPPVTP PIDSNGDRSE ATLLDLCEKV LFLEGRVCDE ALKLFTETKQ ILSASMSNIG
61 SGTAEEMERL WFASILYSVK MLSVRREVDG KSVVAGGNGF NLCQILRALK LNIVDFFREL
121 PQFIVKAGPV LCELYGADWE SRLQAKELQA NVAHLSLLSS YYKRGYREFF LTYDANAEKT
181 SASSSSYLPS SYRFGWLLFL ALRNHAFSRF KDLVTCTNGL VSILAILIIH VPCRFRNFCI
241 KDSSRFVKKG DKDVDLIASL CKIYDASEDE LRVTMDKTNN LIETVLKKKP SSASACGTDK
301 LDNINPDGLT YFEDLLDETS ISTSLITLEK DYTDAVCNRS ELDERVFINE EDSLLGSGSL
361 SAGAVSITGV KRKFDSLSSP ARTFISPLSP HKSPAAKTNS IGGANRLTAT PVSTAMTTAK
421 WFRTVVCTLP PKPSPELEHF LKSCDRDITS DVTRRAHVIL EAIFPNSFLG DRCTGGSLQP
481 VNLMDDIWAK ERRLEAVKLY YRVLETLCRA EAQILHATNL NSLLTNERFH RCMLACSAEL
541 VLATHKSITM LFPAVLERTG ITAFDLCKVI ESFIRYEDSL PRELRRHLNS LEERLLESMV
601 WEKGSSMYNS LIIAKPSLAQ EINQLRLLAE PMPSLDAIAA LINFSEGQNH ASSVQKHETC
661 PGQNGDIKSP KRQCTDYHSV LVERNSFTSP VKDRLLASGN VKSKLPPPPL QSAFASPTRP
721 SPAGGGETCA ETGINIFFTK INKLAAVRIN GMVERLQLSQ QIRESVYRLF QHVLTEQTSL
781 LFNRHIDQII LCCFYGVAKL SQMRLTFKEI VFNYRKQPQC KPLVFGSVYV DSFHCRRQGR
841 VGPDYVNIIT FYNDVFVPAA KTLLVEIVPV KNDQDVEANN KPEGHCPGSS KVSVFPSVPD
901 MSPKKVSAVH NVYVSPLRAS KIDALISHSS RSSYACVGES TRAYQSPSKD LSAINNRLNN
961 SSNRNRKRTL NFDVELVSDS MVANSLPLQN QQNQNGSDAS PSGGAPLKTE PLHS
//