LOCUS RID71395.1 939 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3601
PROTEIN_ID RID71395.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03335"
/db_xref="Phytozome:Brara.C03335"
intron_pos 135:2 (1/26)
intron_pos 159:0 (2/26)
intron_pos 181:0 (3/26)
intron_pos 215:0 (4/26)
intron_pos 230:0 (5/26)
intron_pos 263:0 (6/26)
intron_pos 292:0 (7/26)
intron_pos 315:2 (8/26)
intron_pos 352:0 (9/26)
intron_pos 373:0 (10/26)
intron_pos 395:0 (11/26)
intron_pos 424:2 (12/26)
intron_pos 441:0 (13/26)
intron_pos 470:0 (14/26)
intron_pos 498:1 (15/26)
intron_pos 522:0 (16/26)
intron_pos 552:0 (17/26)
intron_pos 594:0 (18/26)
intron_pos 646:2 (19/26)
intron_pos 674:0 (20/26)
intron_pos 729:0 (21/26)
intron_pos 763:0 (22/26)
intron_pos 808:2 (23/26)
intron_pos 848:0 (24/26)
intron_pos 866:1 (25/26)
intron_pos 899:2 (26/26)
BEGIN
1 MTPFCHSTVS IPNPNSLMSL SSTLRLSSSL LRRSLSHPRH FRFPLADPLC RLRRTQPSGL
61 RFISSLPPQS SNNGGLVVSG DNNNSNDGGG DPRIVPFELH KEATESYMSY ALSVLLGRAL
121 PDVRDGLKPV HRRILFAMHE LGMSSKKPYK KSARVVGEVL GKFHPHGDTA VYDSLVRMAQ
181 SFSLRCPLIQ GHGNFGSIDA DPAAAMRYTE CRLDPLAEAV LLADLDHDTV DFVPNFDNSQ
241 KEPTVLPARL PALLLNGASG IAVGMATNIP PHNLGELVDV LCALIHNPEA TLQELLEYMP
301 APDFPTGGTI MGNLGVLDAY RTGRGRVVVR GKTKVEMLDA KTKRNAVIIT EIPYQTNKAT
361 LVQKIAELVE NKILEGISDI RDESDRNGMR VVIELKRGGD PALVLNNLYR HTALQSSFSC
421 NMVGICDGEP KLMGLKELLQ AFIDFRCSVV ERRERFKLSH AQKRKHIIEG IAVGLDNVDA
481 VIQLIRKASS PSAALQSEYG LSEEQAEAIL AISFRRLTAL ERKKFTDESS SLTEQITKLE
541 QLLSSRTNIL KLIEQEAIEL KDRFSTPRRS VLEDSDSGDL DDIDVIPNEE MLMAISEKGY
601 VKRMKPDTFN LQNRGTIGKS VGKLRVDDAM SDFLVCHAHD HVLFFSDRGI VYSTRAYKIP
661 ECSRNAAGTP LVQILSMSEG ERVTSIVPVS EFSEDQYLLM LTVNGCIKKV PLKLFSGIRS
721 TGIIAIQLNS GDELKWVRCC SSDDLVAMAS QNGMVVLSTC DGVRTLSRNT KGVTAMRLKN
781 ADKMASMDII PSSLRKDMVE KSEEASAEKQ STGPWLLFVC ENGYGKRVPL SSFKPSRLNR
841 VGLIGSKFAE DDRLAAVFVV GYSLAEDGES DEQVVLVSQT GTVNRIKVRD ISIQSRRARG
901 VILMRLDHAG KIQSASLISA ADVEEGEGVQ SLEEATASL
//