LOCUS RID71376.1 855 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3582
PROTEIN_ID RID71376.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03317"
/db_xref="Phytozome:Brara.C03317"
intron_pos 15:0 (1/20)
intron_pos 86:0 (2/20)
intron_pos 144:0 (3/20)
intron_pos 179:0 (4/20)
intron_pos 215:2 (5/20)
intron_pos 275:2 (6/20)
intron_pos 317:0 (7/20)
intron_pos 352:2 (8/20)
intron_pos 451:0 (9/20)
intron_pos 475:1 (10/20)
intron_pos 512:0 (11/20)
intron_pos 548:0 (12/20)
intron_pos 609:0 (13/20)
intron_pos 637:2 (14/20)
intron_pos 694:0 (15/20)
intron_pos 720:0 (16/20)
intron_pos 754:0 (17/20)
intron_pos 779:0 (18/20)
intron_pos 811:0 (19/20)
intron_pos 827:2 (20/20)
BEGIN
1 MGIFNDLPVP SDKTYLREEL ARIDESWAVA RFDSLPHVVH ILTSKDREAD IHVLREQSDV
61 VEEVVDEVVH AYHGGFNKAI QNYSQILRLF RESTEKLGDL KHDLADAKKS LGTRNKQLHQ
121 LWYRSVTLRH IISVLDQIES ISKVPSRIEK LIADKQFYAA IQVYLQSSLM LEREGLQTVG
181 ALQDVRSELS KLRGSLFFKI LDDLHAHLYN RGEYSSVASS IYERDDEVPT TTAVAASRMS
241 SQPLSRRTRT LKGDSQFGAR GLTNGSHRSA SIEEGSSFDG HDEEDSVEHD EASADSKLLS
301 YHLPPWLSDS TPDEFIEAIR KSDDPLHVKY LQTLVECLCM LGKVAAAGAI ICQKLRPTIH
361 EIIISKIKAH METRNLSKSG SNQGDRTGAV GLHIIKGQSE AYRLSKDKPQ NGMPNSGSHL
421 AMSPVSPLMA PGGKAQAAAK DLLDSILDTI NFVKDHLLPT MFVDYRKGVQ QAISSAAAFR
481 PRAHSSTYTP TVEKGRPILQ GLLAIDLLAK EVLGWAQAMP KFATDLVKYV QTFLERTFER
541 CRTSYMEAVL EKLSYRLIGR HDIERLMRLD AASACLPSSL GHSVSHSEAV GSGVELNDLF
601 LSLPSIKQDN LIRDDNKLIL LASLSDSLEY VADSIERLGQ AVPRAASQDS NSRNQATSPR
661 NLASFADEYR KLATDCLKVL RVEMQLETVF HLQEMTNREY LEDEDAEEPD DFVISLTSQI
721 TRRDEGMAPF ISGEKRNYIF GGICGTAASA SIKALADMRS INLFGVQQIC RNTIALEQAM
781 AAIPYIDGES VQQTLDRVRT YFELLNMPFE ALLAFIAEHD QMFTPTEYSN LLKVNVPGRD
841 TPPDAQHRLS EILSH
//