LOCUS RID71364.1 942 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3570
PROTEIN_ID RID71364.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03305"
/db_xref="Phytozome:Brara.C03305"
intron_pos 108:0 (1/23)
intron_pos 132:0 (2/23)
intron_pos 146:2 (3/23)
intron_pos 184:0 (4/23)
intron_pos 208:0 (5/23)
intron_pos 229:0 (6/23)
intron_pos 255:0 (7/23)
intron_pos 286:0 (8/23)
intron_pos 326:0 (9/23)
intron_pos 354:0 (10/23)
intron_pos 424:0 (11/23)
intron_pos 440:0 (12/23)
intron_pos 519:0 (13/23)
intron_pos 554:2 (14/23)
intron_pos 636:1 (15/23)
intron_pos 659:1 (16/23)
intron_pos 681:0 (17/23)
intron_pos 737:2 (18/23)
intron_pos 764:0 (19/23)
intron_pos 845:1 (20/23)
intron_pos 860:2 (21/23)
intron_pos 897:0 (22/23)
intron_pos 918:0 (23/23)
BEGIN
1 MASMAIGVSL WMSNGIRRGD DDVARLSAKT LNLNQKSESS ASRVLSTKRR LASSRAKRTV
61 AKSVLFEEEE EEEKSKKNLR VGLICGGPSA ERGISLNSAR SVLDHIQGNG VSVSCYYIDA
121 HLKAFAISSA QLYSNTPADF DFKLESLAQG FSSLSDLAEH LVSAVDIVFP VIHGRFGEDG
181 GIQELLESHN IPFVGTGSSE CRRAFDKYEA SLELKKHGFM SVPNYLVQGT GVDESEIAQW
241 FTDNRLDLDV GKVVVKPARA GSSIGVKVAF GVKDSIKKAV ELILEGIDDR VVVEVFIENG
301 HEFTAIVLDV GSGSDSHPVV LLPSEVQLQF HGSGDPEEDA IFDYRRKYLP TQQVTYHTPP
361 RFPIHVIKSI REEASLLFQK LGLRDFARID GWYLAPTSNI SSASDETFVG RKSRNIIFTD
421 INLISGMEQN SFLFQQASKV GFSHSNILRT ILHRACSRLP HLTWYNYESS HLVQGSTTLK
481 TSGDVQKVFV IFGGDTSERQ VSVMSGTNVW MNLQRFVDLK VTPCLLSPSL SNSSGAFPDE
541 TESDLDNREV WLLPYSVVLR HTAEEILAEC FEAIEPDRAL FTSLLQKQVM EDLMDGLKNE
601 SWFGGFDITD ELPMRFSLRE WIKLASEAQA TVFIAVHGGI GEDGTLQALL EDEGVAYTGP
661 GVLASRTCMD KVMTSQALSH LSEFGVHTIS KDVKRTDDIM HETISNIWDA LITKLRCLTF
721 CVKPARDGCS TGVARLCSAE DLDVYVQALK DCLPRISPNT LSTTHGMIEM PNTTPEFLIF
781 EPFVETDEII VSSKAKQKLS WKGTRRWVEI TVGVIGKRGS MRSLNPSLTV KESGDILSLE
841 EKFQGGTGIN LTPPPPTIMS KDALERCKQG IELIAETLGL EGFSRIDAFV HVETGEVLVI
901 EVNTVPGMTP STVLIQQALA EQPPMYPPQF FRKLLHLATQ RV
//