LOCUS RID71362.1 1341 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3568
PROTEIN_ID RID71362.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03303"
/db_xref="Phytozome:Brara.C03303"
intron_pos 103:0 (1/21)
intron_pos 137:1 (2/21)
intron_pos 165:0 (3/21)
intron_pos 218:0 (4/21)
intron_pos 257:0 (5/21)
intron_pos 309:2 (6/21)
intron_pos 361:1 (7/21)
intron_pos 409:2 (8/21)
intron_pos 470:0 (9/21)
intron_pos 498:0 (10/21)
intron_pos 535:0 (11/21)
intron_pos 653:0 (12/21)
intron_pos 714:1 (13/21)
intron_pos 903:1 (14/21)
intron_pos 1007:1 (15/21)
intron_pos 1049:2 (16/21)
intron_pos 1091:1 (17/21)
intron_pos 1140:0 (18/21)
intron_pos 1174:0 (19/21)
intron_pos 1202:2 (20/21)
intron_pos 1230:0 (21/21)
BEGIN
1 MALGDLMVSR FSQSSVSLAS SHRYDDDCVS SSQGDSSRRK DSDATSSIYG NGTAERASAT
61 SMAYLPQTIV LRELRHDASE ASALLGTSEG TVLAPKWRLK ERMKTGCVAL VLCLNITVDP
121 PDVIKISPCA RIEAWIDPFS MAPPKALETI GQNLSTQYER WQPRARYKVQ LDPTVDEVRK
181 LCLTCRKYAK TERVLFHYNG HGVPKPTANG EIWVFNKSYT QYIPLPISDL DSWLKTPSIY
241 VFDCSAARMI LNAFAELHDW GSSGSSGSTR DCILLAACDV HETLPQSVEF PADVFTACLT
301 TPIKMALKWF CRRSLLKEII DESLIDRIPG RQNDRKTLLG ELNWIFTAVT DTIAWNVLPH
361 ELFQRLFRQD LLVASLFRNF LLAERIMRSA NCNPISHPML PPTHQHHMWD AWDMAAEICL
421 SHLPQLVLDP NAEFQPSPFF TEQLTAFEVW LDHGSEHKKP PEQLPIVLQV LLSQCHRFRA
481 LVLLGRFLDM GSWAVDLALS VGIFPYVLKL LQTTTNELRQ ILVFIWTKIL ALDKSCQIDL
541 VKDGGHTYFI RFLDSSGAFP EQRAMAAFVL AVIVDGHRRG QEACLEANLI GVCLGHLEAS
601 IPSDPQPEPL FLQWLCLCLG KLWEDFMEAQ IMGREANAFQ KLAPLVSEPQ PEVRAAAVFA
661 LGTLVDIGFD SSKSVVDDEF DDDEKIRAEE AIIKSLLDVV SDGSPLVRAE VAVALARFAF
721 GHKQHLKSAA SSYCKPQSSS LLTSLPSIAK LHDAGNAKLV SLHMSPLTRA STDSQPVARE
781 AKISSSPLGS AGLMNGSPLS DDSSLHSDSG IMLDSVSNGA GHHQRLLDNA VYSQCIRAMF
841 ALARDPSPRI ASLGRRVLSI IGIEQVVAKS SKPTGRLGEA ATTSNTPLTG LARSSSWFDM
901 HAGNLPLSFR TPPVSPPRTN YLLRRVCSLE FKPHLLGSPD SGLADPPLGV SGSERSLLPL
961 STIYSWSCGH FSKPLLGGTD ASQEIVTKRE EKEKFALEHI AKCQHSSISK LSNNPIANWD
1021 TRFESGTKTA LLHPFSPIVV AADENERIRV WNYEEATLLN GFDNHDFPDK GISKLCLINE
1081 LDDSFLLVAS CDGSVRIWKN YATKGKQKLV TGFSSIQGHK PSARDLNAVV DWQQQSGYLY
1141 ASGEVSTVAL WDLEKEQLLR SIPSESECGV TALSASQVHG GQLAAGFADG SLRLYDIRSP
1201 EPLVCATRPH QKVERVVGLS FQPGLDLAKV VSASQAGDIQ FLDLRTTKDT YLTIDAHRGS
1261 LTALAVHRHA PIIASGSAKQ LIKVFSLQGE QLGIIRYYPS FMAQKIGSVS CLAFHPYQVL
1321 LAAGAADSFV SVYTHDNSQA R
//