LOCUS RID71300.1 1704 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3506
PROTEIN_ID RID71300.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03244"
/db_xref="Phytozome:Brara.C03244"
intron_pos 16:0 (1/29)
intron_pos 84:1 (2/29)
intron_pos 114:0 (3/29)
intron_pos 140:1 (4/29)
intron_pos 183:0 (5/29)
intron_pos 216:0 (6/29)
intron_pos 252:1 (7/29)
intron_pos 279:0 (8/29)
intron_pos 355:0 (9/29)
intron_pos 377:0 (10/29)
intron_pos 416:0 (11/29)
intron_pos 482:0 (12/29)
intron_pos 521:0 (13/29)
intron_pos 541:0 (14/29)
intron_pos 570:0 (15/29)
intron_pos 598:0 (16/29)
intron_pos 643:0 (17/29)
intron_pos 664:0 (18/29)
intron_pos 699:0 (19/29)
intron_pos 736:2 (20/29)
intron_pos 821:0 (21/29)
intron_pos 866:2 (22/29)
intron_pos 959:2 (23/29)
intron_pos 1294:0 (24/29)
intron_pos 1456:0 (25/29)
intron_pos 1513:0 (26/29)
intron_pos 1575:0 (27/29)
intron_pos 1616:0 (28/29)
intron_pos 1653:0 (29/29)
BEGIN
1 MAAANAPITM KEVLTLPSVG INQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMSMPMQ
61 PLRRPITADS ALMNPDSRIL ALKAQVPGTT QDHLQIFNIE AKAKLKSHQM PEQVAFWKWI
121 TLKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGP
181 PERAQLVKGN MQLFSVDQQR SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS
241 KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFSLIYVIT KLGLLFVYDL
301 ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL
361 AVNLAKRGNL PGAEELVVER FKELFAQTKY KEAAELAAES PQGILRTPDT VAKFQSVPVQ
421 AGQTPPLLQY FGTLLTKGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV
481 KTVDNDLALK IYIKARATPK VVAAFAERKE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ
541 GAVNFALMMS QMEGGCPVDF NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
601 INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLFIQS LKHYSELPDI KRVIVNTHAI
661 EPQALVEFFG TLSSDWAMEC MKDLLLVNLR GNLQIIVQAC KEYCEQLGVD ACIKLFEQFK
721 SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA
781 KLPDARPLIN VCDRFGFVPD LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE
841 DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
901 NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DEELVNVTNK YSLFKLQARY
961 VVERMDGDLW DKVLLEENEY RRQLIDQVVS TALPESQSPE QVSAAVKAFM TADLPHELIE
1021 LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE
1081 EAFAIFKKFN LNVQAVDVLL DNVKSIERSV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE
1141 SFIRAEDATH FLEVIRATED ANVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201 EEFILMPNVA NLPNVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK
1261 ANSAKTWKEV CFACVDAEEF RLAQICGLNV IIQVDDLEEV SEFYQNRGCF SELISLMESG
1321 LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI
1381 QYDEFDNAAT TVMNHSPEAW EHMQFKDIVA KVANVELYYK AVHFYLQEHP DLINDLLNVL
1441 ALRLDHTRVV DIMRKAGQLR LIKPYMVAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501 HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE
1561 HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA WIHNMLDFAF PYLLQFIREY
1621 SGKVDELIKD KLEAQKEVKA KEQEDKDVMS QQNMYAQLLP LALPAPPMPG MGGGGGYGPP
1681 PPMGGGMPGM PPMPSYGMPP MGGY
//