LOCUS RID71292.1 1299 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3498
PROTEIN_ID RID71292.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03238"
/db_xref="Phytozome:Brara.C03238"
intron_pos 21:0 (1/22)
intron_pos 66:0 (2/22)
intron_pos 73:0 (3/22)
intron_pos 97:2 (4/22)
intron_pos 128:0 (5/22)
intron_pos 156:0 (6/22)
intron_pos 190:0 (7/22)
intron_pos 234:0 (8/22)
intron_pos 258:0 (9/22)
intron_pos 292:2 (10/22)
intron_pos 326:0 (11/22)
intron_pos 446:0 (12/22)
intron_pos 557:0 (13/22)
intron_pos 572:0 (14/22)
intron_pos 632:0 (15/22)
intron_pos 660:0 (16/22)
intron_pos 692:2 (17/22)
intron_pos 720:2 (18/22)
intron_pos 1023:0 (19/22)
intron_pos 1068:0 (20/22)
intron_pos 1203:2 (21/22)
intron_pos 1242:0 (22/22)
BEGIN
1 MARQMTSSQF HKSKTLDNKY MLGDEIGKGA YGRVYIGLDL ENGDFVAIKQ VSLENIVQED
61 LNTIMQEIDL LKNLNHKNIV KYLGSLKTKT HLHIILEYVE NGSLANIIKP NKFGPFPESL
121 VTVYIAQVLE GLVYLHEQGV IHRDIKGANI LTTKEGLVKL ADFGVATKLN EADVNTHSVV
181 GTPYWMAPEV IEMSGVCAAS DIWSVGCTVI ELLTCVPPYY DLQPMPALFR IVQDDSPPIP
241 DSLSPDITDF LRQCFKKDSR QRPDAKTLLS HPWIRNSRRA LQSSLRHSGT IRYMKGADSS
301 SEKDGEGSQD IAESVSAEKV GMSKTNSKSK LGVGSFRSEK DQSSASDIGE ERADSEDDIM
361 SDQGPTLSIH DNKSSLQSST CSISSDAKGT SQDGKSEPDG NLEMEASEGR RKASATKQVG
421 KESSIQMQQR SHSFGPKGED RGLRKAVKTP SSYGGNELTR FSDPPGDACL HDLFHPLNKV
481 PEGKLNEASA STPASNANQG DSPVADGGKN DLATKLRARI AQKQMEGETG HSNDGGDLFR
541 LMMGVLKDDV IDIDGLVFDE KASPDNLLPL QAVEFSRLVS SLRPSETEDA IVTSCQKLVA
601 MFRHRPEQKV VFVTQHGFLP VMDLLDSPKS RVTCAVLQLI NEIIKDNIDF QENACLVGLI
661 PLVMSFAGPE RDRSREIRKE AAYFLQQLCQ SSSLTLQMFI ACRGIPVLVG FLEADYAKYR
721 EMVHLAIDGM WQVFKLKRST PRNDFCRIAA KNGILLRLIN TLYSLNEATL LASEGRSGQL
781 DQHEALLSVI DHPDVLKTRP GGGEEPSNSQ RSDLYQPDGD RPRSSSAALD ATEDVKQHHR
841 ISISSNRTST DKIQKLAESA SNGYAVTQPE QVRPLLSLLE KEPPSRHVSG QLDYVKHIAG
901 LEKHESILPL LRASIDTMPR YFSKTMSKKV MAIEGAASAS GVLSGSGVLN ARLGSDTSSG
961 LLSHMVTTLS AEVASQYLEK VADLLLEFAR ADTTVKSYMC SQSLLSRLFH MFNRVEPPIL
1021 LKILKCTNHL STDPNCLESL QRADAIKHLI PNLEVKEGNL VDQIHHEVLS ALFNLCKINK
1081 RRQEQAAENG IIPHLMLFVM SDSPLKQYAL PLLCDMAHAS RNSREQLRSH GGLDVYLSLL
1141 DDEYWSVIAL DSIAVCLAQD NDNRKVEQAL LKDDAIYTLV NFFQSCPERH FVHILEPFLK
1201 IITKSSRINT TLAVNGLTPL LIARLDHQDA IARLNLLKLI KAVYEHHPRP KQLIVENDLP
1261 QRLQNLIEER REGQHLGGQV LVKQMATSLL KALHINTVL
//