LOCUS RID71221.1 1232 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3427
PROTEIN_ID RID71221.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03171"
/db_xref="Phytozome:Brara.C03171"
intron_pos 208:2 (1/3)
intron_pos 574:0 (2/3)
intron_pos 671:0 (3/3)
BEGIN
1 MDSPSLYPAI GFLTLLVTTF LMAYRRYKLH QNKDIIAYSL SPSSLSSSLS HSSLPSLVSR
61 NWRHQVFPSF RGEDVRRGFL SHIQKEFERK GITLFIDNDI DRSKSIGPEL IEAIRRSKIS
121 VVLISKNYAS SSWCLNELVE IIKCRKELDQ IVMIVFYEVD PSDVKKQSGE FGNVFEKTCQ
181 GKTVEDVARW REALEEVAKI AGYDSRSWTN EADMIEKVAK DVSNMLNVAP PSSGLDELVG
241 IESHITEISS VLSLASDEVR MVGIWGPAGI GKTTIARTLF SIISHHFTHT AFVESTKRGY
301 NDDTAFKLRL QEQLLSQTLD HKDMKIDHLG VAEARLKDKK VLVVLDDVEE AMQLQAMACK
361 TQWFGHGSRI IITTKDIKVL KAHGINHVYH VDYPRGSEAL EILCLSAFGQ KSPYAGFEEL
421 TMEVVSLAGK LPLGLSVFGS YMRGMSKDEW THALPRLRTS LDGNIEKVLR LSYDALCDKD
481 KTLFLHIACF FKHEKAKDML ECLEESGLDV KHGLQVLTER SLVSTNRVGY LLMHSLLQQM
541 GKEIIRKEDI NEPRRRRFLM DAHDICDVLS DTTVSGAVLG IDLGINAVKE ELSLDERALE
601 GMSRLQFLRV YNDNKLILPR GLNNLPRKLR LLHWYRFPMS FLPCEFRAEF LVNLKMQHSH
661 LEKLWEGPPA PLRCLKRMDL SYSYNLRKVP DLSSATNLEA LILTGCRNLE ELPSSVKNLE
721 SLVELRLEGC PTPKDLYAKI SLWKSPSQIH VFECSGLRVL RDVDTAGVTL SLYCDTKIKK
781 MPSWIKLLAH LHSIALTRCH SLKVFPRVPN SIQALDLSET GIQEVPAWIK NLSRLTSLSM
841 VGCKKLKIIP ANINMESLSS LDLSHCTRLK TFPEISTRLE RLNLENTGIE KVPLSINYWL
901 YLVDLSMRGC KSLRVFSNVR EDSMEVLHLC GEEEEEEDRS LRLDLNGCKN LVSLHQLPDS
961 LICLDACNCE LLETVDGFFY NPQVNVHFDN CLKLNEEARE LIQTSASSLA VLPGGEVPSY
1021 FHHQCTGSSL TIPFIKDMDI PDYLRFKACV LLSSFSGTPR TFGVSWCIFD TRKADPVGHG
1081 LCLFSKEKLG TDHLFTFEGS FSLEKDKDHG EVVELWLVFQ MVNEQRMKGS WKWESVEADS
1141 QKLRIMGCGV RFLDVLGDMG GSSYQVEEKT SKVKKANHFE KKRKKKVNPV PFKDNEKSSE
1201 DLSDTDSGLG YNNSLLFIVP RLPLGIYYKG FL
//