LOCUS RID71211.1 1041 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3417
PROTEIN_ID RID71211.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03162"
/db_xref="Phytozome:Brara.C03162"
intron_pos 125:0 (1/5)
intron_pos 163:2 (2/5)
intron_pos 202:0 (3/5)
intron_pos 236:0 (4/5)
intron_pos 923:0 (5/5)
BEGIN
1 MDSTDDDFGE LYVDDKAHAT AFLAGDDVCE ESEHTPILPG ENKGFEVTEE PESRLEAKKL
61 DDVDKDSSPC VDNNACAANR TEAKEESEYS DSDDDDDLNI VLKEDDSVAC GSNASNQRRS
121 VGSWCTMPNS GMVVNGRMTM EDMNPSLGMP QCGYNNFSHT WSRANFHGFE KKPWRNPGVD
181 VNDYFNFGFN EQSWKDYCNP GVKGRAIEVE GGTLGRTPSV DLRIPRELDP DVVIQIPVTI
241 DVEEQSSMTP AEARSLSKTP NKASRSEESH SDIGEDLHSS GDSMKEEVSV GCEDEYTGSF
301 RGEQSTPKEN CRSREVTPCD KEVIEEEKEE TCWSSDKADS SSVESESSHR DRFRFSPTSS
361 YSVGKTEESE DPGTESSKDG AIDDQREAST PPRRTRFAEH EANSTKCVER SDTGHSRHRR
421 SHEDSSKRHY GRVDYEADRR TKHADASRTP DRDLGKKVCY GRGRSYRDST RNWQNRPYFT
481 LGKVGTEGRG LPHSDREKRL GRSYSPVDLD RDRGQRIGWR NNKEPSHGRG FDPSNGYKYE
541 VGLKEYTSGS SFNLNHRNSR VSLNKEEDRY GRQHNERRYG RERSPAIAYE SNKEDRYGRQ
601 HCERKYSRER SPGLAYERNK ERRRYNGVGE PYYQDRIPIP NMEYRYQSEY CSINGRHNPN
661 QSREDEPYYG RRCDYDYDFP RGRYEDEVQR TESGIPFELA YREMHSFAEV GRREFERYEE
721 DFSEIDRRHH YTTLGWHHDR FVSDNDGHNK YRVQGAWPTP SLPFRDSWQT KGSRGDSWRD
781 ETRDFTKREA NDRQNNLLYK DAPRDGWTRN LVRGDNVSIQ DRLRYDDDDD NWVRRDKRRY
841 QLGDSVREIA HSEHPSYTDE MLVTNIGVSA HDRISIKQRP GYFMSHVHET VERHQRSKKL
901 RRDGNAFIKC QDPIDSTGRQ GKLANQSRIR FSNGRDTTEQ QGRQKPRKVM GKGNEKAVVK
961 IKGLIEKEEG EIIQEEERKV TGTGIDEERI QESIKKMERR RERFKEPELV AAKFHFQTEQ
1021 EAKTDVTNQV RPVRKRRWCA S
//