LOCUS RID71205.1 1052 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3411
PROTEIN_ID RID71205.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03156"
/db_xref="Phytozome:Brara.C03156"
intron_pos 366:0 (1/6)
intron_pos 429:0 (2/6)
intron_pos 452:0 (3/6)
intron_pos 542:0 (4/6)
intron_pos 659:0 (5/6)
intron_pos 751:2 (6/6)
BEGIN
1 MATAEAAPAS AGPRYAPEDP TLPKPWKGLI DGSSGVLYYW NPETNVTQYE RPSPPLPAGA
61 PPKLAQIPVP SAGQQGHQAQ LELGKPVGHV PQQHGLQQQP QQFPSQHGRP QMMQQQQHPG
121 QQMPQQSGQQ FSQPQGQSMA PQPHGHPSQQ TYQPTPQQQQ QQQAMQNQHS QMPQQLSHQY
181 PHSQQQYMGY RPYMQQQGTQ SSHQTPPQMG PQGQQFPSQQ EYNSMPPKRE GEEFHRGEKT
241 GFSQPHLQNS EASPSQNTAF EAKASSQRPN ATQQYSGPQG NFQHPAAVTQ FQQPGANLAH
301 QQLGPRPPHH MDQMLHQKSH ASPFRSNNTY ENNLQARPGN DSYGNTRMEG PMRGAQPRHP
361 AAMPEDIRIG GGPPAHADPA MGQTGHGPYG HAGPAFPTVG RPHFATTSDG PHLSPVDSYR
421 KQHEITVTGE NIPAPFITFE SSGLPPELLR ELLSAGFPSP TPIQAQTWPI ALQNRDIVAI
481 AKTGSGKTLG YLIPAFTLLR HCRNDPRNGP TVLILAPTRE LATQIQNEAL RFGRSSRISC
541 TCLYGGAPKG PQLQELERGA DIVVATPGRL NDILEMRKID FQQVSLLVLD EADRMLDMGF
601 EPQIRKIVNE IPPRRQTLMY TATWPNEVRK IANDLLVNPV QVNIGSVDEL AANKAITQYV
661 EVVPQMEKER RLEQILRSQE RGSKVIIFCA TKRLCDHLSR SVGRNFGAVV IHGDKSQGER
721 DWVLNQFRSG KSCVLIATDV AARGLDIKDI RVVINYDFPT GVEDYVHRIG RTGRAGATGV
781 AFTFFTEQDW KYAPDLIKVL EGANQQVPPQ VRDIAMRGGG GGGPGFNQDR RGMVNRFDSG
841 RGGSRWDSAG EFGGRGGGFG GRSGGFGMRD DSFGRGRGFP GPDGGRMNVG RGGFGRFGNN
901 NMDGRGFGRG GGGGGRGFSR GGGRFDNRRG RSRSRSPDLV RPRRSPSYSR SRSRSYSRSR
961 SRSWSRSRSR SPRRSGHKRS RSYSRSPSPV YERRDRRPRV SGFDIKPPAE SVVNPDTVGT
1021 AASETVVPAP LSERQGNGVV ESEVEAALVD KP
//