LOCUS RID71131.1 1011 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3338
PROTEIN_ID RID71131.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03088"
/db_xref="Phytozome:Brara.C03088"
intron_pos 46:2 (1/7)
intron_pos 217:2 (2/7)
intron_pos 472:2 (3/7)
intron_pos 478:1 (4/7)
intron_pos 525:0 (5/7)
intron_pos 618:0 (6/7)
intron_pos 1002:2 (7/7)
BEGIN
1 MGSESDSIEE KAAARKEALR ALRAAQELSE SKEEGDGDDV AVVEEDFVIL FFLLLTVMMA
61 SSSSSSLARS WLYHVFLSFR GEDVRKTFLS HVLEKLENKG INVFIDNEIE RGESVGPELV
121 KAIRHSRVAV VLLSRNYASS SWCLDELVEI MKCREEFGQT VMTIFYQVDP SDVRKQTGDF
181 GKAFEKTCVG KTEEVKQAWR QALKDVAGIA GYHSSNCGNE ADLINKVASD VMVVLGFTPS
241 KDFDDFVGIE ARIMEIKSKL ILQSEEVKVI GIFGPAGIGK TTTARVLYKQ LSTDFQFSTF
301 LEDIRGSYKK PCGNDYQLKL HFQKNLLCQI LNRKNIEVHH LGGAQEMLGD KKVLLVLDEV
361 DNWWQLEEMA KQRRWVGPGS IIIITTEDRK LLKAFGLGID HIYKMKYPTS DESLQIFCQH
421 AFGQNYPDDG FESLAREVTW LAGDLPLGLR VMGSYLRAMS RDEWIEALPW LRLIASKDYG
481 FIYMHRLLEQ MGREIVKKQA MENPAAPKFL TDTKEISDVL DEDTATGNVV GIMLCTSQKI
541 QINKSAFQGM NNLQFLYFAP DTTTCTLEGL DCLPDKLILL HWPECPLRVW PSKFSGKFLV
601 ELIMPCSEFE LLWEGIKPLP CLKKLNLSSS QNLKKIPDLS KATSLEELCL QECVSLLELT
661 SSFRNATKLY RLDISGCKKI KDFPNVPDSI IELDLCKTGI KEVPPWIDNL FRLRKLIMNG
721 CKKLKTISPN ISKLENLEFL ALRNYGYCGV HNHEEKYDDG LYMYVNLFEA IIEWGPDFKR
781 RWRLQSDLEV DYILPICLPE KAFTSPISLR LRGYGIKTIP DCITRLSGLI KLEVGECREL
841 VEITPLPDSL LYLDAQGCES LKRIDSSSFQ NPEICMNFAY CINLKQKARK LIQTSACKYA
901 VLPGEEVPAH FTHRASSSSL TITSTPRPLT SSFRFKACIL LSTVYDHLGD TGDDDEKEGE
961 NSLTSMSYSV RAKQNGLTVG CGSNQLLMPA LYRPFRRIAP YRKRHKHRSK Q
//