LOCUS RID71117.1 697 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3324
PROTEIN_ID RID71117.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03075"
/db_xref="Phytozome:Brara.C03075"
intron_pos 68:2 (1/19)
intron_pos 96:0 (2/19)
intron_pos 163:0 (3/19)
intron_pos 232:2 (4/19)
intron_pos 257:0 (5/19)
intron_pos 276:0 (6/19)
intron_pos 302:2 (7/19)
intron_pos 323:2 (8/19)
intron_pos 353:0 (9/19)
intron_pos 387:1 (10/19)
intron_pos 422:0 (11/19)
intron_pos 446:2 (12/19)
intron_pos 468:1 (13/19)
intron_pos 527:0 (14/19)
intron_pos 549:2 (15/19)
intron_pos 570:0 (16/19)
intron_pos 582:2 (17/19)
intron_pos 605:2 (18/19)
intron_pos 690:0 (19/19)
BEGIN
1 MKAMKLNKTV SSCLLRLLKP YSSSFHWTST MAATAKTSEG MKTVDESDVG ISCFISQLPG
61 FRGILKQRYA DFIVNEVDMD GNVVRLTSLD VSPEMDVKEE DKTKSSDDVP QSYASAIESF
121 RSLCSASDAE RMETLVNQVT SGADDEISPV VLDPSSDKSK RTAIHNFVKE KFKFLVTDTV
181 DGPDPTSKCI RVRVNSGNAG GKRSRKRKER GDKPFDSRGS EHWPADVGKF LKFHLYKENK
241 DTQEALGLIG KMLGVQPKSF GFSGTKDKRS VSTQRVTVFK QQASKLAALN KRLFGIKVGD
301 FSLVKEGLLL GQLMGNRFTI TLRGVVADSE ETIKKSAESL GKDGFINYFG LQRFGSGSVP
361 THHVGAALLK GEWKEAVDMI LDPRESERNV VNEAREYYKE TGDIDGTLRQ LPRYLVAERA
421 ILQCLKKCPG NYLQALKGVP RTLRMMYVHS YQSYLWNNAT SLRVQKYGTN QVVLGDLVST
481 KVDDAKRVVG SLNSEQKENS EEALDCDQLD DTAVVDLPGE RSDLVKVVGK EDVEAGTYST
541 SDIVLPLPGS RVIYPSNDVA EIFHDLAKKD GISLTESIHG VKEFSITSMT GGYRRVFQKP
601 VDFEWELLTY TDSNKPLAET DLDRITMEKP VDKAGSAEET ESDSNQPESC ETDLKDSEQT
661 QLALKMALTL PSSCYATMAI RELLKTSTSV AYHKTLN
//