LOCUS RID70935.1 1438 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3140
PROTEIN_ID RID70935.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02909"
/db_xref="Phytozome:Brara.C02909"
intron_pos 39:2 (1/11)
intron_pos 59:2 (2/11)
intron_pos 95:0 (3/11)
intron_pos 118:0 (4/11)
intron_pos 136:0 (5/11)
intron_pos 171:0 (6/11)
intron_pos 220:0 (7/11)
intron_pos 335:0 (8/11)
intron_pos 1097:2 (9/11)
intron_pos 1258:0 (10/11)
intron_pos 1287:0 (11/11)
BEGIN
1 MQRYHPANCT SAVNNTAIGA RDSGRADSSS IGNYSLNSRR PPPLTPYKLR CEKDGLNSRL
61 GPPDFHTPTS SSPEENLTKE YIQFGYKETV DGLKEADEII LTQVHTFSKP VVLKCKESVR
121 KCFRAINESR ALKRKAGQVY GVPLSGSLLG KPGFPEQKSC GEETKKKWIE SLSQQHKRLR
181 SLADNIPGYR RKTLFEVLIR NNVPLLRATW FIKVTYLNQV RPSTAAISSG TPDKTQNSRC
241 EQWTKDVIEY LQYLLDELLS RNSSYPSQQT RDRSPQMLYA GSMQKISPAS SSLYGEETSL
301 HFKWWYMVRL LQWHHAEGLL FPYLIVDWVL RLLQEKDVFE ILLLLLPIVY GFLESIVLSQ
361 TYVQSLVAIA VRFIEEPAPG GSDLVDNSRR AYTLSALIEM VRYLVLAAPD TFVSSNCLPL
421 PPSIAACGPN DVSYASKAYE NLEKLRSNSS EISTQFQGRG VDSRFGFLSF DYTISTIQRS
481 ADDLAKIASA GYPQHNVAKA VQALDKALSD GDIRAAYSYL FEDLCNGAVD ETWIAEVSPC
541 LRSSLRWIGA ISTSFVCSAF FLIEWATCDF RDFRAGVPKD IKFSGRKDCS QVYLVIQLLK
601 QQILGGEFAA RKGKNRRSNS LGVSKPSSSM DAFESPGPLH DIIVCWIDQH EVHRGGAKRL
661 QLLVFELIRS GIFNPVAYVR QLIFSGMIDM IQSAADPERR IRHHRILKQL PGWFVYDTLE
721 EAQLLGGDKL EEAVRIYSNE RRLLLRELLV NADQKSKKNS TFLPSVDLPR TFNAMADNQE
781 LRKHTKRSKD IRELKERIAA LLQLPDVSCG VKNSVRDEFQ SSVKESSGSV YSKMDHLEST
841 PGCEDCKRAK RKKMNDEKSS SYQGSSPIAS DEEDNWWIKK GFKTVEPSLK VDPLMEITKQ
901 VPRGRQKMVR KTQSLAQLQA ARIEGSQGAS TSHVCDNKVS CPHHGPGVEG VNHKVVDVFR
961 TSTSVDIVSV GNSLKQLQFV DKRSIAVWLV NVVRQLVEES EKSSVRVGQF NKGAPVEEKN
1021 TVRWKLGADE LSSILFLMDI SLDLVSVVKF LFWLLPKAKS SPSFSVQGGR NLVIMPRNVE
1081 NNVCEVGEAI LVSSLRRYEN ILFSADLVPE AMTALMARAA SLMSSNGKIS GSAALVYARY
1141 ILNRYGNLPS VVEWHNNFKA TCEKRLLSEL DHTRSGNGEY EIPLNVPAGV DNADDYLRKK
1201 ISSSGTRLSR VGLNMREVVQ RHVEETTHYL RKLIGTDTMK ASLAEKNDDG YQVAQQIPNW
1261 LKPRSSSNES SKDFTLFDRD AAESLQNELA RMQLPDTIRW RIQAAMPILL PSLRCSLSCQ
1321 PHSVPPTALT LVQPSGSAAA GLNQRNSPAT PKTVTAAAAG QGKLKQNMLS PCQQQEADNT
1381 DMVDPWTLLE DGTSSGQSSS NALNSSDMGN LRATCWLKGA VRVRRTDLTY IGSVDEDS
//