LOCUS RID70844.1 1219 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3050
PROTEIN_ID RID70844.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02824"
/db_xref="Phytozome:Brara.C02824"
intron_pos 28:0 (1/9)
intron_pos 58:0 (2/9)
intron_pos 93:0 (3/9)
intron_pos 127:0 (4/9)
intron_pos 155:1 (5/9)
intron_pos 178:2 (6/9)
intron_pos 193:2 (7/9)
intron_pos 1050:2 (8/9)
intron_pos 1123:0 (9/9)
BEGIN
1 MESGLPCMTF SGVRFALVGF NPTDANTVRS KLMSGGGVDA GQYSQEYTHL IVDKLVYDDP
61 VCVAARSSGK VVVTGSWVHH SFDAGMLIDA NSVLYRPLRD LNGIPGAKGL IVCLTGYQRQ
121 DREDIMTMVD LMGGQFSKPL VANRVTHLIC YKFEGEKYEL AKRMKRIKLV NHRWLEDCLK
181 NWKLLPEVDY QISGHELEMM EASARDSEDE AEDASAKRAN TSPLGLRVSA VSAVEMSKSR
241 GKDIPVVQTK LDEHGGSSRC NTSKEDWLTP KKMEATVSTD PITAQQSAGT FQNTSTYASP
301 VPVNKASERG MGKMETDDST PINVSIRRHS SLATYSRKTL QRSSETSTLG NESSCQNGTL
361 RMDDRALKAS TAFNISASKS SSSVERKTLF EDLDKTDTLH GEESTPLLPQ VKLTDGSVSS
421 KGSPPAMSTA ENIISKCAPD EIPERSSIEP VVGNMLLQEP RSGSPKQNLK VVPNINDNTE
481 GEEVAHKLDV SDSATRLCSS SVVLKEADTW TAEILKGGLD ERSVTEPEMM RSSTSPVETE
541 PPKKKTAPRK SLGTRGRKKN PTISQKGSIY LSEPTPKDEH SDGLIKGNVS ELATDDSNQK
601 EIPSPVLNAE AVPEMAKGSV SETEALDRID SDKQQVKTPE EAGAEVEIKM LESELAEVPT
661 KDPSDGALQS EISKSKNERM SEKKGSSSRA EAADSGVKKT KKSRKEDDAK ANDTVMEDIT
721 VLENKLGKVS SGGDQSPAAG ETLVSTEAET NDQSDAAVQS GVDKDNGKLR KKATVGKTRL
781 QSGKKRNSSA VEVEKASVKK TKKSKADDET EANDTVMNGI EIDSAEVKED AAVDKKPEDV
841 SSDRTQSPVA RKPSTRKETA AKNLSNAAMQ LEVPKNKRKI RKEPAVERSS LQSGEKESSS
901 TVEVGSSSVK KSKKSKKERG AKASDTVMKD IEDNSAEEKE STEVDNKSGP GIDKRPKKKA
961 AKTAKTGAKT AKESNQLSSS KKALQEQRQE PKHFIVSGPK VQRKEYQKIL RLLNGKCCRD
1021 SHQWSYQATH FIAPEIRRTE KFFAAAASGS WILKTDYVAD SKEAGKLLPE EPYEWHGTGL
1081 SADGSISLES PRKWRLVKEQ TGHGALHGLR VVVYGDCAVP SLDTLKRAVK AGDGTILATA
1141 PPYTRFLNQN TDFALISPGM PRDNVWVQEF IRHEIPCVVA DYIVEYVCKP GYALDKHVLY
1201 NTNAWAERSF NKLQLSAED
//