LOCUS RID70636.1 907 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2842
PROTEIN_ID RID70636.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02644"
/db_xref="Phytozome:Brara.C02644"
intron_pos 52:2 (1/12)
intron_pos 118:2 (2/12)
intron_pos 167:0 (3/12)
intron_pos 187:0 (4/12)
intron_pos 220:0 (5/12)
intron_pos 345:0 (6/12)
intron_pos 392:0 (7/12)
intron_pos 449:0 (8/12)
intron_pos 535:0 (9/12)
intron_pos 586:2 (10/12)
intron_pos 764:2 (11/12)
intron_pos 855:0 (12/12)
BEGIN
1 MTIANSTDFM VENAVCDFPS TPEEERRIVS ELTTESEDNL KEGNLYFVIS KRWYTRWEKY
61 VEQPTTNGCE SPRPGPIENS DIIENTTSSD DPQLRRLLVE GEHYVLVPQQ VWNRLAEWYS
121 GGPPIPRKLI CQGFYSRSFS VEVYPLCLLL TDARDDSITA IRLGKQASIK ELYEKVCAMT
181 EVSQEKAHIW DYFGKRKGQL LDPSSNKSLE ESSLHMDQDI LLEVDGSSSS HIAMSSAGNE
241 LALVPLEPSR SLVTIAGGPT LSNGHSTTSK FSLFPRITSE DDGCDSLSIL GKGERGGLAG
301 LSNLGNTCFM NSALQCLAHT PPIIEYFLQD YSEDINRDNP LGMCGELAIA FGELLKKLWS
361 SGRNAVAPRS FKTKLARFAP QFSGYNQHDS QELLAFLLDG LHEDLNKVKR KPYIELKDSD
421 SRPDEEVAEE LWNYHKARND SVIVNVCQGQ YKSTLICPVC GKISITFDPF MYLSLPLPST
481 LTRQITVTLF YCDGSHLPMP YTVTVPKYGS CRDLITALGT ACCLTNDESL LLAEIYDHKV
541 FRYFENPLES LNLIKDDEHI VAYRMKQMQK GSGKAKLEIL HGGQERAVLE SVRGRDVKLF
601 GTPFVTYVNT ERLSGPDIDA VISGFLSPLH RVQASSKIHN GVENGHLPNA DTVEASGSIS
661 SPDTEIEDAC DRELSFRIFL TDERGLDFKP LKSDSSLKPG IVTRVLVEWN EGEHENYDSS
721 YLNDLPEVHK TSFSAKKTRQ EAISLFSCLE AFLAEEPLGP DDMWFCPGCK EHRQANKKLD
781 LWKLPDILVF HLKRFTYSRY LKNKIETFVD FPINDLDLSK YVKNKNGQSY LYELYAVSNH
841 YGGLGGGHYT AYAKLIDDNK WHHFDDSHVS SVNESEIKNS AAYVLFYRRV GSKIESQTAE
901 VSMADMD
//