LOCUS RID70585.1 749 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2791
PROTEIN_ID RID70585.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02594"
/db_xref="Phytozome:Brara.C02594"
intron_pos 101:0 (1/15)
intron_pos 158:2 (2/15)
intron_pos 183:0 (3/15)
intron_pos 228:0 (4/15)
intron_pos 298:1 (5/15)
intron_pos 348:0 (6/15)
intron_pos 381:0 (7/15)
intron_pos 404:1 (8/15)
intron_pos 449:2 (9/15)
intron_pos 481:1 (10/15)
intron_pos 517:2 (11/15)
intron_pos 573:0 (12/15)
intron_pos 627:0 (13/15)
intron_pos 681:1 (14/15)
intron_pos 736:0 (15/15)
BEGIN
1 MMDGSPLAVA MEEEDSTATA MDVEESPSTS IAPRDPPKIQ RLEESVVNRI AAGEVIQRPV
61 SAVKELVENS LDADSTSINV TVKDGGLKLI QVSDDGHGIR REDLPILCER HTTSKLSKYE
121 DLFSLSSMGF RGEALASMTY VAHVTVTTIT KGQIHGHRVS YRDGVMEHEP KACAAVKGTQ
181 IMVENLFYNM IARRKTLQNS ADDYGKIVDL LSRMAIHHNN VSFSCRKHGA VKADVHSVVS
241 SSRLDSIRSV YGVSVAKSLI KVEVSSGESS GCAFDMEGFV SNSNYVAKKT ILVLFINDRL
301 VECSALKRAI EIVYAATLPK ASKPFVYMSI NLPRENVDIN IHPTKKEVSL LNQEIMIEMI
361 QSEVELKLRN TNDTRTFQEQ KVEYIQSTLK SSRSDTPVSP LPSGQKTPKV PVHKMVRTDS
421 SDPAGRLHAF LQPKPHNLPD TVSSLSAVRS SIRQRRNPKE TADLSSVQEL LSGVDSCCHP
481 GLLETVRNCT YVGMADDVFA LVQYQTHLYL ANVVNLSKEL MYQQTLRRFA HFNAIQLSDP
541 APLSELILLA LQEEDLDPEN NEKDHLKERI AEMNTELLME KVEMLEEYFS VFIDSDGNLS
601 RLPVILDQYT PDMDRVPEFL LCLGNDVEWE DEKACFQGVS AAIGNFYAMH PPLLPNPSGD
661 GVGFYYTKTS EKSSQENPAL GGNVEMESVL DQDLLSDAET AWAQREWSIQ HVLFPSMRLF
721 LKPPASMASN GTFVKVASLE KLYKIFERC
//