LOCUS RID70464.1 986 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2670
PROTEIN_ID RID70464.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02480"
/db_xref="Phytozome:Brara.C02480"
intron_pos 26:1 (1/11)
intron_pos 53:1 (2/11)
intron_pos 91:0 (3/11)
intron_pos 139:0 (4/11)
intron_pos 298:0 (5/11)
intron_pos 496:1 (6/11)
intron_pos 519:1 (7/11)
intron_pos 559:0 (8/11)
intron_pos 600:0 (9/11)
intron_pos 760:0 (10/11)
intron_pos 899:0 (11/11)
BEGIN
1 MMFQVSDLGH RDVETPSSNN GQDNIGSMNK KHPYARQEAG FSSNHGDNQD NDELPRKRNY
61 PETEKGSSSR HSCIVADATT ATSLHTYTPV FLTQDFTSLG GLKGKCDKKC SPKRIISSMG
121 TRFVTFTLAP VDVRHCRLRL PMQFSRENGI NKPGKIYLLG NDGSKWLANL LQESRGRMTV
181 GDGWKSFVKA NGLKIGESYT LELNWEDTTP VLSLCPTDHH SIGIRAEGEC SEASGNESLP
241 IRPSSGTEVI KYDNRKDESS SWESEKNHLR SRDSSSASQN RFLTLTITPD SLRHGRLRLP
301 LEFMTENSMN RPGDITLLGK DGAKWLASLL LERRGRMCLG KGWKDFAKAN GLKTGDSITL
361 ESIWEDSTPV LRLLHIESSD DRRQQGECSK ARDKESAFTE PSSGNKTRKL EGNREESRIY
421 PLTRLDSSLV NQNRFEISTL SPEIGRHGAH DYQIGEIVVF RDERDMMFQV SDLGPRFSVI
481 QNVLAPSSNS DQENIGSIST IRKETGFSIY DGDDQYNLEL PRKKKAKKNN PGTEAYSSPE
541 RSCFVAHVTA SNLHMDAPHL PQDSTSSNSP TQIVSSYLSS EKQVATFTLA PVDVRNCRLR
601 LPMQFTRENG INKPGKIYLL GKDGSKWLAN LLLESRGRMT LGDGWKSFVK ANGLKTGESF
661 TLKLNWEDAT PVLSLCPPEC SIDSREGGGE CSETIEKEPL PIVLSCGKEI SKDDENRKKE
721 SRSWERETNL LIWRNSTVLS QNRCLTLTIT PDSLKHGRLR LPLEFMTDNS MNKPGEITLL
781 GKDGVKWLVS LLLEKRGRMS LGKGWKDFAK ANGLKTGDSI TLESIWENAT PVLSLLRVES
841 SNDGEVSKQS GNKTRKAENR REGSSSWELE KRRYSSSAIQ NRTVILTLTP EGVRDCKLQL
901 PSQFMRTNGI MNPKKITLLG RSGMKWFAYL LSKDGTIALE NGWKGFCEAN GVMVGESFVL
961 ELIPTQDADH VFKFYSNYGY HIHNKC
//