LOCUS RID70460.1 1455 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2666
PROTEIN_ID RID70460.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02478"
/db_xref="Phytozome:Brara.C02478"
intron_pos 279:0 (1/14)
intron_pos 434:0 (2/14)
intron_pos 470:0 (3/14)
intron_pos 1058:0 (4/14)
intron_pos 1097:0 (5/14)
intron_pos 1158:0 (6/14)
intron_pos 1179:0 (7/14)
intron_pos 1203:0 (8/14)
intron_pos 1287:0 (9/14)
intron_pos 1327:0 (10/14)
intron_pos 1347:0 (11/14)
intron_pos 1360:2 (12/14)
intron_pos 1386:2 (13/14)
intron_pos 1415:0 (14/14)
BEGIN
1 MEKRHLSSKF SSSMAQNQLI DSLTSHIALY HSNSSSSSSS SIANNPRSAI LRWFSSLSVH
61 QRLSHLTFVD PKFVKILLQM LGYIRTKGHG SFIILPDLPS LDLPSLCFKK SRGLISRVAL
121 SNASERSLFD STRLFGSKQG EDCSCSLDSV VMAEELLTNV DHFVETMDAL SSGSFLRGEE
181 TDLGSSDWVE LEWLKAKGYY TMEAFIANRL EVSLRLAWLN TSNGKKRGMK LKEKLNAAAA
241 AANAYWRTKA CVDWWQNLEA ATHKKIWTCL LAKSAKSVIY EILREANQAS QGEMWLFSFG
301 ARECSSDMLL ESRRPNAIAS NLSALYVLQE FASLLVLCQN GLLSVQSVFF SSLASLPTLV
361 DCILRKLRGF LMVISVDSVK RELLEENTPK CSKSSSSKQS SGSTSRKHKG KSGNMKKPTP
421 EAKSDRNINL SAKKDQAKLE SHKNKDAVDK KAPTSSTMIN CSKASAANME AVPGLVADKG
481 RAKKKRRDKN KNKNKKCTSL ENTRVVNESV LNSSAIEKAP ECESNCTSAN QLPQEHIDAK
541 SIGVICDRNG SSEGASGNDA VKCENSGEEE LNEKAGTCVI SSVLTSTDSA GTSSCDNVNS
601 QKSCCPGERK DILSSSNGRS RTTLEEGESQ RIHHQRREAA GYGIASSSSE FVSYEWPAIA
661 PMYFPHLNSH LPTATDRLHL DVGHNLHAYV RQPFVSTVHH ARNPSIEGTH KQVLPRPMPM
721 SLDWPPMVHS NCGLTTAFTC NYDSGILVDI PEQKNKPELG NECENNWMLE EDFEMHTVSG
781 VDYNQYFGGG VMYWNPSEHL GTGFSRPPSL SSDDSSWAWH EAEMKRSVDD MVAFSSSYSA
841 NGLASPTSAS FCSPFDPLGP ANQPLGYVVP GNEISTKVLQ APPTTSEAAA GEEEVSGTLT
901 SLSGDVEGNS GDSFPYPILR PIIIPNMSKS EYKRSYDTIS PNVPPTRREH PRIKRPPSPV
961 VLCVPRAPRP PPPSPVSNSR ARRGFPTVRS GSSSPRHWGM RGWFHDGVNW EEPCGAEVVL
1021 PWRNKSLAVR PIIQPLPGAL LQDHLIAMSQ LGRDQEHPDV AFPLQPPELL NCPTQGESQS
1081 LIHGRLNDEI DSFCKQVAAE NMSRKPYINW AIKRVTRSLQ VLWPRSRTNI FGSSATGLAL
1141 PSSDVDLVVC LPPVRNLEPI KEAGILEGRN GIKETCLQHA ARYLANQEWV KTDSLKAVEN
1201 TAIPIIMLVV EVPCDLVCSI QSPKDGPDCI TVDQDSNSNT DMVGFEDSAA ANSLPTKAGN
1261 MANAKCVRLD ISFKTPSHTG LQTTQLVKDL TEQFPAATPL ALVLKQFLAD RTLDQSYSGG
1321 LSSYCLVLLI TRFLQHEHHL GRSINQNIGR LLMDFLYFFG NVFDPRQMRV SVQGSGIYRN
1381 RERGHSIDPI HIDDPLFPTN NVGRNCFRIH QCIKAFSEAY SVLENELTCI TSSSALCEKQ
1441 LYKLLPKIIP SIISA
//