LOCUS RID70416.1 1200 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2622
PROTEIN_ID RID70416.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02438"
/db_xref="Phytozome:Brara.C02438"
intron_pos 6:0 (1/27)
intron_pos 31:1 (2/27)
intron_pos 44:1 (3/27)
intron_pos 67:0 (4/27)
intron_pos 91:0 (5/27)
intron_pos 117:2 (6/27)
intron_pos 144:0 (7/27)
intron_pos 183:1 (8/27)
intron_pos 242:0 (9/27)
intron_pos 324:0 (10/27)
intron_pos 364:2 (11/27)
intron_pos 413:0 (12/27)
intron_pos 470:2 (13/27)
intron_pos 504:0 (14/27)
intron_pos 549:2 (15/27)
intron_pos 617:0 (16/27)
intron_pos 646:1 (17/27)
intron_pos 704:1 (18/27)
intron_pos 753:0 (19/27)
intron_pos 817:0 (20/27)
intron_pos 878:1 (21/27)
intron_pos 902:0 (22/27)
intron_pos 952:2 (23/27)
intron_pos 1009:0 (24/27)
intron_pos 1052:0 (25/27)
intron_pos 1080:0 (26/27)
intron_pos 1138:1 (27/27)
BEGIN
1 MYIKLVIIEG FKSYNEQTAT EDFSRKVNCV VGANGSGKSN FFHAIRFVLS DIFQNLRNED
61 RNALLHEGVG HQVGSAFVEI VFDNSDNRIP VDKDEIRLRR AIGLKKDEYF LDGKHITKNE
121 VMDLLESAGF SRSNRYYVVQ QGKIASLTMM KDSERLDLLK EIGGTRVYEE KRCESLKVMQ
181 DTGIKRNHII EAVQYLDEKL RELDEEKDEL RKYQQLDKQR KSLEYTIYEK ELHDTREKLE
241 QTEAERTKAS EESTKMYDRV EKAQDECRSL DESLAGLTKE LQTMNKKKET VEALKTEAIK
301 KKTKLELDEN DLKERIAGNI QSKNDALEQI SMVEREMQDS LKELEVITPL YESQVDKEKQ
361 TTKRIMELEK KLNILYQKQG RATQFSDKAT RDKWLRKEIK DLMRVLDSTM YQEQKLQDEI
421 FRLNTDLKER DAHIKNHEVE ISELDTHISK SHEQFSTKKR ERDEEHRKRR EKWGEESQLS
481 SEIDKLKMEL ERAKKNLDHA TPGDVRRGLI SIKRICSEHK INGVFGPLVE LVDCDEKFFT
541 AVEVTAGNSL FHVVVENDDI STKIIKHLNS RKGGRVTFIP LNRVNAPHVN YPQCSDAIPL
601 LRRLKFDSKF APAFGQVFGR TVVCQDLNVA TRVAKSDGLD CITLEGDQVS GKGGMTGGFY
661 DHRRSKLRLM NTIIQNMKSI DTKEKVLEDV RRQLQDILSI IYFDQQITQI VTEQQRLESD
721 WKHSRLQVEQ LKQEIANETK QKHAIHIALE HKEKSLGDVR IQMEQLRSSM AMKEAEMATE
781 LVDHLTPEET EELSRLNPEI EDLKDKLIAF KTDRIETETR KAELETNLST NLKRRIDELH
841 ATIASIDDYS LPSSAGLETQ ELDDAKLLVK EFTNELQGLC RSIDEKTKQV KKIKDKKEKL
901 KTLQDDCEMK LQDANKKLEE LFSLRNTLLS KQEEYRKKIM GLGPFSSESF DLHKQENIKE
961 LQKMLHGCSE QLQQFSHVNK KALDQYVNFT EQQEELQKRK AELDAGDEKI KELITVLDQQ
1021 KDESIERTYK MVSFHFREIF SQLVQGGHGH LDRDHDDEDG CGEAATERRV EKYDGVTVKV
1081 SFTDQGETRS MKQLSGGQKT VVALALIFAI QKCDPAPFYL FDEIDAALDT QYRTAVGNMI
1141 RGLADDSVST QFITTTFRPE LVKVADKMYG VFHKNNASIV KVISKEQALN FIQNDQSHDT
//