LOCUS RID70389.1 1122 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2595
PROTEIN_ID RID70389.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02415"
/db_xref="Phytozome:Brara.C02415"
intron_pos 85:0 (1/24)
intron_pos 141:0 (2/24)
intron_pos 166:0 (3/24)
intron_pos 192:1 (4/24)
intron_pos 214:0 (5/24)
intron_pos 244:0 (6/24)
intron_pos 274:0 (7/24)
intron_pos 303:0 (8/24)
intron_pos 331:0 (9/24)
intron_pos 371:0 (10/24)
intron_pos 380:2 (11/24)
intron_pos 425:0 (12/24)
intron_pos 601:0 (13/24)
intron_pos 772:2 (14/24)
intron_pos 794:0 (15/24)
intron_pos 828:1 (16/24)
intron_pos 892:0 (17/24)
intron_pos 934:0 (18/24)
intron_pos 957:2 (19/24)
intron_pos 978:2 (20/24)
intron_pos 1003:0 (21/24)
intron_pos 1043:0 (22/24)
intron_pos 1069:0 (23/24)
intron_pos 1086:0 (24/24)
BEGIN
1 MQPNLFPFGS VLGNPFLFNG GDLSEGGGGG GFESSRLFFL LPLLLSQGQG MDLSKVGEKF
61 LSSVKSASSL GLLPSPPSSS DRPEIPARAA AAAAVARALA ALPPDQRLSI SSTATELSSI
121 YGNRPPPQDV QELEQGFYEE DFDPVRHILE NVPDDQSDLA YFEKQATLRL VQLDRVAESL
181 SHHVMEHHEV MVKGMNLVRE LEKDLKIANV ICKNGRRNLT SSMNEASRDL IVHTHSKKKQ
241 ALLDMLPILT DLRHARVMQS SLEDLVEEGN YCKAFQVLSE YLQLLDSLSE FSAIQEMTRG
301 VEVWLGRTLH KLDSLLMGVC QEFKEDSYIM VLDAYALIGD VSGLAEKIQS FFMQEVISET
361 HSVLKTVVGE DNSAATQFSR LTYSDLCIQT PESKFRQCLL RTLAVLFQLI YSYHQIMSFT
421 PEMKVEDLIS TSSATTQKID SVTDTSCDPQ GGGLSSTMSS ASIPSSTISA EVSVESETSS
481 PVQQASNSAI DKSRDSGDTV SNGESPWYYL RKESAGFVSG TLQRGRRNLW QLTTSRVSVL
541 LSSPAASSTS IHQFLKNYED LSVFILAGEA FCGFEVVDFR EKLKAVCENY FTAFHRQSMH
601 ALKMVLEKET WTRLPPDTVQ AINFAGLVGD GAPLIISSRS ASGSSRFPLS TDPSGNKSGG
661 FSYWLKSGNP FSAKLTYYRE DQDYSSDSGA ASEDQDYSSD VVNSKVRDRK GINGGSPVSG
721 DENEDLHADY IDEDSQLPRR SFTRSISRSS SSHLSTNDDL KAQTGSSLCL LRSMDKYARL
781 MQKLELVNVE FFKGICQLFG VFFYFVYQVF GQENTNSGGK GVSNSSSHRL KSCLSRISQE
841 CEQWIKPQFS SSSPASSLAF PNTVHSLADV TPSSPLNTTS GHVSGISFSL KERCAAVDTV
901 SLVARILHKS KAHLQSMLMS RNGSLVEDFF GQLVGSVPDL TEHLHRTTAR ILLHVNGYVD
961 RIANSKWEVK ELGVEHNGYV DLMLGEFKHY KTRLAHGGIP QEVQNLLLEY GVEIFAETLV
1021 EGLSRIKRCT DEGRALMSLD IQVLINGLQH FVPTNVKPKL QIVDTFIKAY YLPETEYVHW
1081 ARGHPEYTKG QVVGLVTLVA TMKGWKRKTR LEVVEKIESA AA
//