LOCUS RID70380.1 820 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2586
PROTEIN_ID RID70380.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02406"
/db_xref="Phytozome:Brara.C02406"
intron_pos 49:0 (1/17)
intron_pos 64:0 (2/17)
intron_pos 105:0 (3/17)
intron_pos 141:0 (4/17)
intron_pos 179:0 (5/17)
intron_pos 237:0 (6/17)
intron_pos 283:0 (7/17)
intron_pos 319:0 (8/17)
intron_pos 355:0 (9/17)
intron_pos 404:2 (10/17)
intron_pos 456:0 (11/17)
intron_pos 509:2 (12/17)
intron_pos 578:2 (13/17)
intron_pos 640:0 (14/17)
intron_pos 668:0 (15/17)
intron_pos 733:2 (16/17)
intron_pos 753:2 (17/17)
BEGIN
1 MDDFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSVTYLGE LGLLQFRDLN ADKSPFQRTF
61 ATQVKRCGEM SRKLRFFKDQ IDKAGLRCLQ RHELEPNIEL GDLERQLADH EHEVLEMNSN
121 SEKLRQTYNE LLEFKIVLQK ASGFLVSSNA HAIGDETELH ESTYSNNGFI ESSSLLEQEM
181 RPEPLNQSGL RFISGIINKD KLLRFERMLF RATRGNMLFN QTPSDEEIMD PSTSEMVEKN
241 VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDIIKQRQLT REVLSRLSDL EATLDAGSRH
301 RNNALNAVGY SLTKWMTTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ
361 RATSDSNSQV GVIFHVMHAV ESPPTYFRTN KLTNAFQEII DAYGVARYQE ANPAVYSVVT
421 YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSKQKLGSF MEMLFGGRYV ILLMALFSIY
481 CGLIYNEFFS VPFHIFGGSA YKCRDTTCSD AYTAGLVKYR DPYPFGVDPS WRGSRSELPY
541 LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII
601 IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI LLLLLAFIAV PWMLFPKPFA
661 LRKIHMERFQ GRTYGLLGTS EVDLDVEPDS ARSHQEEEFN FSEIFVHQLI HSIEFVLGSV
721 SNTASYLRLW ALSLAHSELS TVFYEKVLLL AWGYENILIR LIGVVVFAFA TAFILLMMET
781 LSAFLHALRL HWVEFMGKFF HGDGYKFKPF SFTLISDDDE
//