LOCUS RID70147.1 961 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2352
PROTEIN_ID RID70147.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02189"
/db_xref="Phytozome:Brara.C02189"
intron_pos 12:2 (1/12)
intron_pos 30:0 (2/12)
intron_pos 56:2 (3/12)
intron_pos 83:0 (4/12)
intron_pos 111:0 (5/12)
intron_pos 159:2 (6/12)
intron_pos 263:2 (7/12)
intron_pos 277:2 (8/12)
intron_pos 310:2 (9/12)
intron_pos 401:1 (10/12)
intron_pos 477:0 (11/12)
intron_pos 787:1 (12/12)
BEGIN
1 MKKVFGQTVR DLKREVNKKV LKVPGIEQKV LDSTSNEPWG PHGSLLADIA QASRNYHEYQ
61 LIMGVIWKRL SDTGKNWRHV YKALTVLEYM VGHGSERVIE EIRERAYQIS TLSDFQYIDS
121 GGRDQGTNVR KKSQSLVALV NDKERIAEVR EKASANRDKY RSSAPGGMHK PSGGYGDKYD
181 YGSRDEERSS YGREREYGYR DDDRNSRDGD RHSRDSEDRY GRDGNREDDY RGRSRSVDNY
241 QNGSRGRSSE RERTFEDDGH SSRGSGARAD DSSQDGRGQL QRKFSEQNIG APPSYEEAVS
301 DSRSPVYSER DGGETPQATA PGAGSPPPPQ AVAPGAGSPP PPQAVAPGGG SPPAPQVAAP
361 GDASPPAGNS TDNKSTGFVN ESSPQNFQDF DEFDPRGAFA AGPPAYASVD GVSAPPTVAS
421 TSAPPTSNNV EMDLLDSLAD VFSSNALAVV PAESTSVETN GQANAPSFST PQPSTQPFDD
481 PFGESPFKAF TSRDSDSNPQ QSFGAPFQPT PPAFTSEVSH PDTSHNFGFG ESFSAVANPE
541 PGVQNVQSPS NSPGFPQEQF DTSENDFDIL AGILPPSGPQ VSVPQQSSAS VPTSQFPPSG
601 NMYEGYHPQP VSTAPNMPGQ TPFGQAVQPY NMVPHSQNTT GATPFHNGGF MHQPGSAVYN
661 PGVVTSHPTS ESFHPRPVAA TSSSSQTPYS TPSGPAGQFM APSHAPQRTQ SGPVTMQGNN
721 NFMGDMFTQQ AGPTSAVTSS SSSYSDLTPI TGAIEIVPPP QKKFEPKSSV WADTLSRGLV
781 NFNISGPKTN PLADIGVDFE AINRREKRLE KPTNTPPATS TINMGKAMGS GTGLGRAGAT
841 AMRPPPNPMV GSGMPMGGGG YGGMNQNQHM GMGMGPGMNP NQPMGMGMGP GMNQNQPMGM
901 GMGPGMNMNM NMGGGYGQGY PMQPQNQGMV PGPNMPGNNN YNPMMGQGGY NPQQSYGGGY
961 R
//