LOCUS RID70057.1 1445 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2263
PROTEIN_ID RID70057.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02110"
/db_xref="Phytozome:Brara.C02110"
intron_pos 83:0 (1/29)
intron_pos 187:1 (2/29)
intron_pos 335:0 (3/29)
intron_pos 379:0 (4/29)
intron_pos 412:0 (5/29)
intron_pos 435:2 (6/29)
intron_pos 468:0 (7/29)
intron_pos 499:0 (8/29)
intron_pos 547:2 (9/29)
intron_pos 601:0 (10/29)
intron_pos 638:0 (11/29)
intron_pos 663:0 (12/29)
intron_pos 690:0 (13/29)
intron_pos 722:1 (14/29)
intron_pos 761:0 (15/29)
intron_pos 827:0 (16/29)
intron_pos 864:0 (17/29)
intron_pos 944:0 (18/29)
intron_pos 977:0 (19/29)
intron_pos 1009:0 (20/29)
intron_pos 1075:0 (21/29)
intron_pos 1100:0 (22/29)
intron_pos 1142:0 (23/29)
intron_pos 1175:0 (24/29)
intron_pos 1222:2 (25/29)
intron_pos 1254:0 (26/29)
intron_pos 1333:2 (27/29)
intron_pos 1360:0 (28/29)
intron_pos 1388:0 (29/29)
BEGIN
1 MALQSPGAAG ASSSFSRLLS SAKLSSTKTL FSVDFVGTKR RNGLSVFRGS TPLLKSSLRS
61 PLSAKSILNF DASASGSDLK PKVAYLEDIV SERGECGVGF IAHLENEATH KIVKDALIAL
121 GCMEHRGGCG ADNASGDGSG LMTSIPWDLF NHWAEKKGLA SFDKLHTGVG MLFLPRDENV
181 RREAKKVVTS IFEKEGLEVL GWRDVPVEPS IVGHYARKTM PNTQQVFVRI VKEDKVDDVE
241 RELYICRKLI ERAVASESWA SELYFSSLSN QTIVYKGMLR SEVLGLFYPD LQNDLYKSAF
301 AIYHRRFSTN TSPRWPLAQP MRFLGHNGEI NTIQGNLNWM TSREASLKSP VWHGREDDIR
361 PISNPKASDS SNLDSAAELL IRSGRTPEES LMILVPEAYK NHPTLMIKYP EAVDFYDYYK
421 GQMEPWDGPA LILFSDGKTV GACLDRNGLR PARYWRTSDN VVYVASEVGV LPMDESKVTM
481 KGRLGPGMMI SVDLESGQVY ENTEVKKRVA SYNPYGKWVS ENLRTMKPSN FLSSASMETE
541 EILRRQQAFG YSSEDVQMVI ESMAAQGKEP TFCMGDDTPV AVLSQKPHML YDYFKQRFAQ
601 VTNPAIDPLR EGLVMSLEVN IGKRGNILEV GPQNVSQVVL SGPVLNEREL EGLLSDPHLK
661 SEIYGLGKEV VEFSFRGSAS RIGGLTLDEL ARETLTFWVR AFSEDTAKRL ENFGFIQFRP
721 GGEYHGNNPE MSKLLHKAVR EKSETAYAVY QQHLANRPIT VFRDLLEFKS DRKPIPVGRV
781 EPASSIVERF CTGGMSLGAI SRETHETIAI AMNRLGGKSN SGEGGEDPIR WKPLTDVVDG
841 YSSTLPHLKG LRNGDTATSA IKQVASGRFG VTPTFLVNAD QLEIKVAQGA KPGEGGQLPG
901 KKVSPYIARL RNSKPGVPLI SPPPHHDIYS IEDLAQLIFD LHQVNPKAKV SVKLVSEAGI
961 GTVASGVAKA NADIIQISGY DGGTGASPIS SIKHAGGPWE LGLAETQQTL IGNGLRERVI
1021 IRVDGGFKSG VDVLIAAAMG ADEYGFGTLA MIATGCIMAR ICHTNNCPVG VASQREELRA
1081 RFPGLPGDLV NFFLYIAEEV RGILAQLGYE KLDDIIGRTD LLKPRDISLV KTHLDLSYLL
1141 SSVGLPKRSS TSIRKQEVHS NGPVLDDTLL QDPEIMDAIE NEKMVHKTMS IYNVDRSVCG
1201 RVAGVIAKKY GDTGFAGQLN LTFNGSAGQS FACFLSPGMN IRLVGEANDY VGKGMAGGEV
1261 VILPVESTGF LPEDATIVGN TCLYGATGGL LFVRGKAGER FAVRNSLAQA VVEGTGDHCC
1321 EYMTGGCVVV LGKVGRNVAA GMTGGLAYIL DEDDTLLPKV NKEIVKIQRV TSPVGQTQLK
1381 SLIQSHVEKT GSSKGAAIVE EWDKYLGMFW QLVPPSEEDT PEANSDHHLK TTTGEEEQVS
1441 NTFAV
//