LOCUS RID69938.1 822 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-2144
PROTEIN_ID RID69938.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C02001"
/db_xref="Phytozome:Brara.C02001"
intron_pos 117:1 (1/15)
intron_pos 176:0 (2/15)
intron_pos 224:1 (3/15)
intron_pos 242:0 (4/15)
intron_pos 290:0 (5/15)
intron_pos 325:0 (6/15)
intron_pos 367:0 (7/15)
intron_pos 433:0 (8/15)
intron_pos 468:2 (9/15)
intron_pos 523:0 (10/15)
intron_pos 545:0 (11/15)
intron_pos 576:1 (12/15)
intron_pos 614:0 (13/15)
intron_pos 637:2 (14/15)
intron_pos 689:0 (15/15)
BEGIN
1 MASVSPPSPS CSTIRTPVRR SPRTGGAFAV SELRRFKQRR AVLPPVAVSL GHVADVVRND
61 VEFLKNKIGI GIKWANVAFR VPEVTKSAEE VFWLRHLEDS ASPPLEQPSL PQPSYSGLTG
121 VDLLMADVKA LEAYAGYIYC LSKMWSRPLP EVYDPQAVAD YFNCRPHVVA FRLLEVFSAF
181 MVAAIRLRTS SESDKGKKLE ASGQKFGMVL KETMLHLGPT FIKVGQSLST RPDLIGTETA
241 KALSELHDRI PPFPWPEASK VIEEELGAPV ESFFSQFSQE TVAAASFGQV YRGRTLDGLD
301 VAVKVQRPDL RHAVLRDIYI LRLGLGVLRK IAKRESDIRV YADELGKGLA GELDFTLEAA
361 NASEFREAHS RFSYIRVPKV YQHLTRKRVL TMEWMVGESP TDLQAITTGY SENDTQSHER
421 QKLEARRRLL DLVNKGVEAT LVQLLDTGIL HADPHPGNLR YTTSRQIGFL DFGLVCRMER
481 KHQLAMLASI VHIVNGDWSS LVEALGDMDV TKPGVNTRRF TLDLELALGE VELKNGIPDI
541 EFTKVLSKIV QVALKYQLRM PPYFTLVLRS LACLEGLAAS GDPNFKTFEA AYPFVVQKLL
601 TENSAATTKI LHSAVLNRKK EFRWERVALF LSKSSVRKGS PLVTPSRDET SVHSSSNQTD
661 KDVDTVSLVM KLLASKDGVV LRRLLMAANG TSLIRTFISK EAHAIRQKLC TMVADTLYQW
721 MVGISGVNSL KFISLPDPPP SSGTNITVKD FKNLIEDKRV RVILRKILES TKSDRVLTLK
781 FGLTSFVMFL TASALACHRF VISVSEGYVN YLSLSAPVAL RT
//